View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5295-Insertion-1 (Length: 740)
Name: NF5295-Insertion-1
Description: NF5295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5295-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 7 - 740
Target Start/End: Original strand, 30994993 - 30995722
Alignment:
| Q |
7 |
agatagttggattgttgtttcttctacgtaaccacaaaaatcacaatttatcgaagtattcacatctaagacatgtctattcgcaacatttgacgtagtt |
106 |
Q |
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| T |
30994993 |
agatagttggattgttgtttcttctacgaaaccacaaaaatcacaacttatcgaagtattcacatctaagacatgtcttttcgcaacatttgactgagtt |
30995092 |
T |
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| Q |
107 |
ggactctattaaaaaacaaattccaagagaaagccattgccttaaactgagctggacttcttcaaaggcgcccaaatacaatctgctctgcaaggctcac |
206 |
Q |
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| T |
30995093 |
agactctattaaaaaacaaattccaagagaaagccactgccttaaactgagctggactgcttcaaaggcgcccaaatacaatctgctctgcaaggctcac |
30995192 |
T |
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| Q |
207 |
accaccatctaataagcaaaacctctcaagtaaaatatagcaagactttaccgaaaaaataccaccctcctccatcatccccct-aaagaatctgcatca |
305 |
Q |
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| T |
30995193 |
accaccatctaataagcaaaacctctcaagtaaaatatagcaagactttaccgaaaaaataccaccctcctccatcatccacctccaagaatctgcatca |
30995292 |
T |
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| Q |
306 |
tccaaacctcgaaaaccgttgagaaagacttagaacacataatttagctatcatcttttaattgtagtaattgcataccggtctccatatatagttactt |
405 |
Q |
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| T |
30995293 |
tccaaaccacgaaaaccgttgagaaagacttagaacacataatttaactatcatcttttaattgtagtaattgcataccggtctccatatatagttactt |
30995392 |
T |
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| Q |
406 |
gcattgcaaacatactaagcaaaaaagtaactttttaacaacaacgcccttttattaccactttttataatatttatttatcattttctgacaaaatctg |
505 |
Q |
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| T |
30995393 |
gcattgcaaacatactaagcaaaaaagtaactttttaacaacaacgcccttttattaccactttttataatatttatttatcattttctgacaaaatctg |
30995492 |
T |
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| Q |
506 |
caaattnnnnnnnnngtacaatgaatatagacacacaatacactagtgttacaataataatatttctttttgagagtttcttagcacgccacttgtttct |
605 |
Q |
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| T |
30995493 |
caaattaaaaaaaaa--acaataaatatagacacacaatacaccagtgttacaataataatatttctttttgagagtttcttagcacgctacttgtttct |
30995590 |
T |
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| Q |
606 |
catgtgtcccatgatattttagaatatacattccaaaagtgtaaaaatatgttaagaaaatccctcttcttttcaaattttagaatttgaaaataggaca |
705 |
Q |
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| T |
30995591 |
catgtgccccatgatattttcgaatatacattccaaaagtgt-aaaatatgttaagaaaat-cctctt-ttttcaaattttagaatttgaaaataggaca |
30995687 |
T |
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| Q |
706 |
tgcgacaagtttgaaggtgagaaaattgaaattca |
740 |
Q |
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| T |
30995688 |
tgcgagaagtttgaaggtgaaaaaattgaaattca |
30995722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 38705881 - 38705939
Alignment:
| Q |
202 |
ctcacaccaccatctaataagcaaaacctctcaagtaaaatatagcaagactttaccga |
260 |
Q |
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| T |
38705881 |
ctcacaccaccctctagtaaacacaagctctcaagtaaattataacaagactttaccga |
38705939 |
T |
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