View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5295-Insertion-2 (Length: 422)
Name: NF5295-Insertion-2
Description: NF5295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5295-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 4918282 - 4918039
Alignment:
| Q |
6 |
cacaattggcctaactctgtgatcaattgttgtgttcttgtgtgnnnnnnnatttgctttcttttgagccacatttgctattataaccaataacaatcat |
105 |
Q |
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| T |
4918282 |
cacaattggccgaactctgtgatcaattgttgtgttcttgtgtgtttttttatttgctttcttttgagccacatttgctattataaccaataacaatcat |
4918183 |
T |
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| Q |
106 |
tcatttcatcgcttaatggaaatgtcaaatcctgtcttcatagtatactaaataaaacatgtcataacacatgaagacaggtggaagacaataggatcaa |
205 |
Q |
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| T |
4918182 |
tcatttcatagcttaatggaaatgtcaaatcctgtcttcatagtatactaaataaaacatgtcataacacatgaagacgggtggaaaacaataggatcaa |
4918083 |
T |
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| Q |
206 |
atgttcctcactccacagaatcttgagattaactttagtatgaa |
249 |
Q |
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| T |
4918082 |
atgttcctcactccacagaatcttgagattaactttagtatgaa |
4918039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 248 - 422
Target Start/End: Complemental strand, 4918014 - 4917840
Alignment:
| Q |
248 |
aatcaaggtcctaaatgcatttgacatttcctcatttttcaacacttccatatttacaaaggctgctagttggaattcaaactggttagtccgacgactg |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4918014 |
aatcaaggtcctaaatgcatttgacatttcctcatttttcaacacttccatatttacaaaggctgctagttggaattcaaactggttagtccgacaactg |
4917915 |
T |
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| Q |
348 |
ggaatggccagtctttacaaatgtgatacttcagttgaaatggatctatacaactccaaaccatcaactgctcat |
422 |
Q |
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| T |
4917914 |
ggaatggccagtctttacaaatgtgatacttcagttgaaatggatctatacaactccaaaccatcaactgctcat |
4917840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 22622624 - 22622584
Alignment:
| Q |
7 |
acaattggcctaactctgtgatcaattgttgtgttcttgtg |
47 |
Q |
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|||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
22622624 |
acaattggccgaactctatgatcaattgttgtgtttttgtg |
22622584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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