View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5295-Insertion-3 (Length: 230)
Name: NF5295-Insertion-3
Description: NF5295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5295-Insertion-3 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 4142240 - 4142311
Alignment:
| Q |
159 |
acttattttctatatgacagtgctgctcatgctgcagctggtctctttatggtaccgttgtctactttgtgt |
230 |
Q |
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| T |
4142240 |
acttgttttctatatgacagtgctgctcgtgttgcagctggtctctttatggtactgatgtcgactttgtgt |
4142311 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 4141824 - 4141880
Alignment:
| Q |
19 |
ggaggaggaggctatggattaagcggcaatgatcataattcattgcatccacaattt |
75 |
Q |
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| T |
4141824 |
ggaggagtaggttatggattaagcggcgatgatcataattcattgcatccacaattt |
4141880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 4141956 - 4141998
Alignment:
| Q |
73 |
tttacagaaataagctgctccgaatgatcgaagaattacactt |
115 |
Q |
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| T |
4141956 |
tttacagaaataagcagctccaaatgatcaaagaattacactt |
4141998 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 3854833 - 3854777
Alignment:
| Q |
19 |
ggaggaggaggctatggattaagcggcaatgatcataattcattgcatccacaattt |
75 |
Q |
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| T |
3854833 |
ggaggaggaggctatggatcaagcgttgatgatcataattcattgcatccacaattt |
3854777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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