View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5295-Insertion-5 (Length: 75)

Name: NF5295-Insertion-5
Description: NF5295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5295-Insertion-5
NF5295-Insertion-5
[»] chr7 (9 HSPs)
chr7 (8-75)||(39589416-39589483)
chr7 (12-75)||(39538134-39538197)
chr7 (12-75)||(39366019-39366082)
chr7 (12-75)||(39353509-39353572)
chr7 (12-75)||(39547592-39547655)
chr7 (21-75)||(39338666-39338720)
chr7 (12-68)||(1084930-1084986)
chr7 (21-75)||(39564380-39564434)
chr7 (18-66)||(39622194-39622242)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 4e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-31
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 39589416 - 39589483
Alignment:
Q  8 cttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39589416 cttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 39589483  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-24
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 39538134 - 39538197
Alignment:
Q  12 ggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 75  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39538134 ggatagccagaaattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacat 39538197  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 39366082 - 39366019
Alignment:
Q  12 ggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 75  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39366082 ggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacat 39366019  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 39353572 - 39353509
Alignment:
Q  12 ggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 75  Q
    ||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  39353572 ggatagccggaaattgtgatgttcccaccaatatatccaccggtttttctaccagaaagcacat 39353509  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 39547592 - 39547655
Alignment:
Q  12 ggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 75  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  39547592 ggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagtacat 39547655  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 39338720 - 39338666
Alignment:
Q  21 gaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 75  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39338720 gaaattttgatgttcccaccaatatatccaccagtttttctaccagaaagcacat 39338666  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 1084930 - 1084986
Alignment:
Q  12 ggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaa 68  Q
    ||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  1084930 ggatagccagaaattatgatgttcccaccaatatatccatcagtttttctaccagaa 1084986  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 39564380 - 39564434
Alignment:
Q  21 gaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacat 75  Q
    |||||||||||| |||||||||||||||| || ||||| ||||||||||||||||    
T  39564380 gaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacat 39564434  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39622194 - 39622242
Alignment:
Q  18 ccagaaattgtgatggtcccaccaatatatccaccagtttttctaccag 66  Q
    |||||||||||||||||||||||||||||||| |  |||||||| ||||    
T  39622194 ccagaaattgtgatggtcccaccaatatatcctctggtttttcttccag 39622242  T

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