View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5295_high_1 (Length: 503)
Name: NF5295_high_1
Description: NF5295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5295_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 189 - 490
Target Start/End: Complemental strand, 27871592 - 27871291
Alignment:
| Q |
189 |
actttcaacacaacattaatcactttttcttcttcttttgagtgtaccctctaattaataagatttgtatttcttacgattcaatatcttcaactttact |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
27871592 |
actttcaacacaacattaatcactttttcttcttcttttgagtgtaccctctaataaataatatttgtatttcttacaattcaatatcttcaactttact |
27871493 |
T |
|
| Q |
289 |
tatgatacctataaatatacaaattcatagtaaagatgttttagttaaaatattattctttctttctttttatatttaaacaattttcttaattgggact |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
27871492 |
tatgatacctataaatatacaaattcatagtaaagatgttttagttaaaatattattctttctttctttttatatttatacatttttcttaattaggact |
27871393 |
T |
|
| Q |
389 |
ccacccaatcatagttataagaaaaaacatttattaaattcattgagtacttaatgtatttatttaatannnnnnnnaagaaatttatttattcagtatt |
488 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
27871392 |
ccacccaatcatagttataagaaaaaacatttattagattcattgagtacttaatttatttatttaatattttttttaagaaatttatttattcagtatt |
27871293 |
T |
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| Q |
489 |
at |
490 |
Q |
| |
|
|| |
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|
| T |
27871292 |
at |
27871291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 13858794 - 13858881
Alignment:
| Q |
101 |
attaaatcgttcaatgaaaccaaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcatcgaaacctataaac |
188 |
Q |
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| T |
13858794 |
attaaatcgtttaatgaaaccaaaacaaaagcatcttagtttaaataacaatttaaaaaacattcattattcatcgaaacctataaac |
13858881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 26052907 - 26052833
Alignment:
| Q |
101 |
attaaatcgttcaatgaaaccaaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcatc |
175 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26052907 |
attaaatcgttcaatgaaaccaaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcatc |
26052833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 46574510 - 46574436
Alignment:
| Q |
22 |
taatggtaaacttacactacaaaatggggatacacaactaaaattgagtgacctttaatccaaacttagccaaat |
96 |
Q |
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| T |
46574510 |
taatggtaaacttacactacaaaatggggatacacaactaaaattgagtgacctttaatccaaacttagccaaat |
46574436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 32028401 - 32028332
Alignment:
| Q |
105 |
aatcgttcaatgaaaccaaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcatc |
175 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32028401 |
aatcgttcaatgaaaccaaaacaaa-gcatcttagtttaaataacaattgaaaaaacattcattattcatc |
32028332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 3924574 - 3924519
Alignment:
| Q |
120 |
ccaaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcatc |
175 |
Q |
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|
|||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
3924574 |
ccaaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatc |
3924519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 3908561 - 3908504
Alignment:
| Q |
117 |
aaaccaaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcat |
174 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||| |
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| T |
3908561 |
aaaccaaaacaaatgcatcttagtttaattagcaattgaaagaacattcattattcat |
3908504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 29089014 - 29088968
Alignment:
| Q |
101 |
attaaatcgttcaatgaaaccaaaacaaaagcatcttagtttaaata |
147 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29089014 |
attaaatcgttctatgaaaccaaaacaaaagcatcttagtttaaata |
29088968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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