View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5295_high_3 (Length: 298)
Name: NF5295_high_3
Description: NF5295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5295_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 33239579 - 33239309
Alignment:
| Q |
11 |
aaaataactaaatgagaatggaacaaaagggaattgcaattgcatgcagatttatgtgcatgcaaagtatttattcaatcttatataattaaaatgcaga |
110 |
Q |
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| T |
33239579 |
aaaaaaactaaatgagaatggaacaaaagggaattgcaattgcatgcagatttatgtgcatgcaaagtatttattcaattttatgtaattaaaatgcaga |
33239480 |
T |
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| Q |
111 |
tgaaatgaagccataatttattttccatgcccttgcatcaaagagtaaacaaggtggttacatggcactagactttcatcttcattcatacacacatgca |
210 |
Q |
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| T |
33239479 |
tgaaatgaagccataatttatttacca--cccttgcatcaaagagtaaacaaggtggttacatggcactagactttcatcttcattcatacacacatgca |
33239382 |
T |
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| Q |
211 |
taaatatagaaaaatgtagacaattacagaaattcaaaaacttcaaactcccaaattaagcatatagcaaact |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33239381 |
taaatatagaaaaatgtagacaattacagaaattcaaaaacttcaaactcccaaattaagcatatagcaaact |
33239309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33239632 - 33239601
Alignment:
| Q |
1 |
ataacatgttaaaataactaaatgagaatgga |
32 |
Q |
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| T |
33239632 |
ataacatgttaaaataactaaatgagaatgga |
33239601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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