View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5295_low_4 (Length: 294)
Name: NF5295_low_4
Description: NF5295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5295_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 43289518 - 43289755
Alignment:
| Q |
41 |
caatggaacaaagctatcagcacaagcattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttctcgattctcttc |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43289518 |
caatggaacaaagctatcagcacaagcattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttctcgattctcttc |
43289617 |
T |
|
| Q |
141 |
ctcgtccttccaccgtcgtctggaactccgtcatcatcggcttcatctgcaacaacttgcctcatcaagctcttcttttatacgccaaaatgagatcaaa |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43289618 |
ctcgtccttccaccgtcgtctggaactccgtcatcatcggcttcatctgcaacaacttgcctcatcaagctcttcttttatacgccaaaatgagatcaaa |
43289717 |
T |
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| Q |
241 |
ttcttcttgttctacttttgatccttatacattctctt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43289718 |
ttcttcttgttctacttttgatccttatacattctctt |
43289755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 52105042 - 52105275
Alignment:
| Q |
41 |
caatggaacaaagctatcagcacaagcattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttctcgattctcttc |
140 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
52105042 |
caatggaacaaagcaatcagcacaaacattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttgttgattctcttc |
52105141 |
T |
|
| Q |
141 |
ctcgtccttccaccgtcgtctggaactccgtcatcatcggcttcatctgcaacaacttgcctcatcaagctcttcttttatacgccaaaatgagatcaaa |
240 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52105142 |
ctcgtccttccaccgtcgtctggaactccgtcatcaccggcttcatctgcaacaacttgcctcaccaagctcttcttttatacgccaaaatgagatcaaa |
52105241 |
T |
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| Q |
241 |
ttcttcttgttctacttttgatccttatacattctctt |
278 |
Q |
| |
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|||||||||||||||| || ||||||||||||||| |
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| T |
52105242 |
---ttcttgttctactttt-attcttatacattctctt |
52105275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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