View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296-Insertion-1 (Length: 682)
Name: NF5296-Insertion-1
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Original strand, 41990222 - 41990732
Alignment:
| Q |
8 |
caagctttgcacgaatattttgccctaacatcttcatgatcactcctttcttccagggccgaaaaaatactcttattttctttattcgataacaaaaaat |
107 |
Q |
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| T |
41990222 |
caagctttgcacgaatattttgcc-taacatcttcatgatcactcctttcttccagggccgaaaaatt-ctcttattttctttattcgataacaaaaaat |
41990319 |
T |
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| Q |
108 |
caggacatttgtacttgccattcatagattattcaatattgatatcttcacctt-------cctcctttcaacaatgacacctcctcctcgttagaccaa |
200 |
Q |
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| T |
41990320 |
caggacatttgtacttgccattcatagattattcaatattgatatctgcacctttctccttcctcctttcaacaatgacacctcctcctcgttagaccaa |
41990419 |
T |
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| Q |
201 |
tcaaaatcatccacaaaattgatttcaactgtcgaaaaccgtctccttgaaaaacccacccccatatcttatttccatccatctccatgctctcatcccc |
300 |
Q |
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| T |
41990420 |
tcaaaatcatccacaaaattaatttcaattgtcgaaaaccgtctccttaaaaaacccacccccatatcttatttccatccatctccatgctctcatcccc |
41990519 |
T |
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| Q |
301 |
accactcgtctttgtcgatagtgatacatgttcaacaaatgggtgttctccatgctacactctttcaaatcttcttcatctttgttgtttccacgtgcct |
400 |
Q |
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| T |
41990520 |
accacccgtctttgtcgatagtgatacatgttcaacaaatgggtgttctccatgctacactctttcaaatcttcttcatctttgttgtttccacgtgcct |
41990619 |
T |
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| Q |
401 |
cactttgttttggaacataaaatgtttaaaataattttttactatcttgggtatgcataatgaaagtaaaatttttactacaaatttcaatacttaaaac |
500 |
Q |
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| T |
41990620 |
cactt--gtttgta----taaatg-ttaaaata--tttttactatctt-ggtatgcat-atg-aagtaaaa-ttttactac-aatttcaatacttaaa-- |
41990703 |
T |
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| Q |
501 |
aaaaacaattattggacataaatttgttta |
530 |
Q |
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| T |
41990704 |
caaaacaattattggacat-aatttgttta |
41990732 |
T |
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