View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5296-Insertion-2 (Length: 597)

Name: NF5296-Insertion-2
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5296-Insertion-2
NF5296-Insertion-2
[»] chr6 (2 HSPs)
chr6 (108-552)||(29601164-29601602)
chr6 (7-43)||(29601599-29601635)
[»] chr7 (2 HSPs)
chr7 (96-376)||(9756910-9757184)
chr7 (202-238)||(15902821-15902857)
[»] chr3 (7 HSPs)
chr3 (30-87)||(16205259-16205316)
chr3 (285-369)||(33327728-33327813)
chr3 (285-366)||(33352371-33352453)
chr3 (204-238)||(46191371-46191405)
chr3 (200-238)||(48202291-48202329)
chr3 (200-229)||(5339116-5339145)
chr3 (202-238)||(32804564-32804600)
[»] chr5 (2 HSPs)
chr5 (204-238)||(9449468-9449502)
chr5 (202-238)||(2577204-2577240)
[»] chr8 (2 HSPs)
chr8 (204-237)||(12985392-12985425)
chr8 (202-238)||(39954303-39954339)
[»] chr4 (3 HSPs)
chr4 (204-241)||(5775384-5775421)
chr4 (200-229)||(7214544-7214573)
chr4 (200-229)||(33950144-33950173)
[»] chr1 (1 HSPs)
chr1 (200-236)||(10799671-10799707)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 108 - 552
Target Start/End: Complemental strand, 29601602 - 29601164
Alignment:
Q  108 acccattatgaatcacggacaccctttggattaggagtgtcctattgttggacatgtgtcgatgtcaaacactgacatgacactgacacataattaaatt 207  Q
    ||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||       ||| | ||||||||||||||||||||||||||    
T  29601602 acccattatgaatcacggatatccattggattaagagtgtcctattgttggacatgtgtcgg------acaataacatgacactgacacataattaaatt 29601509  T
Q  208 atgtgattttctcaaattattatgggtgtcgtgtttatgttcatgtctgatgtcagtatttatatcgatgcttcataggatactcatcccaattgcaact 307  Q
    ||||||||||||||||||||||| | ||| ||||||||||| ||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||| |    
T  29601508 atgtgattttctcaaattattatagatgttgtgtttatgtttatgtctgatatcaatatttgtatccatgcttcataggatactcatcccaattgcaatt 29601409  T
Q  308 tgttttactggcatatttatcttatccatccatttagtacatgatgctcaacctatatatcagaaagtactgtaaaataagaatnnnnnnncagggtata 407  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||       |||||||||    
T  29601408 tgttttactgacatatttatcttatccatccatttagtacaggatgctcaacctatatatcagaaagtattgtaaaataagaataaaaaagcagggtata 29601309  T
Q  408 gaaagcatgaagaagtgacttaaagaattacaagcatacatggaaagtcaccagaattatacataagtatgttccaagagtaaatactaagctcaaatgc 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29601308 gaaagcatgaagaagtgacttaaagaattacaagcatacatggaaaatcaccagaattatacataagtatgttccaagagtaaatactaagctcaaatgc 29601209  T
Q  508 caatgacaattggatatagtggcataagatgtccatccttttgat 552  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  29601208 caatgacagttggatatagtggcataagatgtccatccttttgat 29601164  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 29601635 - 29601599
Alignment:
Q  7 attaataacactatactatagattcataacttaaccc 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  29601635 attaataacactatactatagattcataacttaaccc 29601599  T

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Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 96 - 376
Target Start/End: Original strand, 9756910 - 9757184
Alignment:
Q  96 gtttagaggggtacccattatgaatcacggacaccctttggattaggagtgtcctattgttggacatgtgtcgatgtcaaacactgacatgacactgaca 195  Q
    ||||||||||| ||||| |||||||||| |||| |||||| |||||  ||||||| ||||||||||||||||||||||            |||||| |||    
T  9756910 gtttagaggggcacccactatgaatcacagacatcctttgaattagacgtgtcctgttgttggacatgtgtcgatgtcg-----------gacactaaca 9756998  T
Q  196 cataattaaa-----ttatgtgattttctcaaattattatgggtgtcgtgtttatgttcatgtctgatgtcagtatttatatcgatgcttcataggatac 290  Q
    ||||||||||     || |||||||||||||||||||||| ||| || || || |||| |||||| ||||  |||||| |||  |||||||||| |||||    
T  9756999 cataattaaactgaattgtgtgattttctcaaattattattggtatcctgcttgtgtttatgtctaatgttcgtatttgtattcatgcttcataagatac 9757098  T
Q  291 tcatcccaattgcaacttgttttactggcatatttatcttatccatccatttagtacatgatgctcaacctatatatcagaaagta 376  Q
    ||||||  |||||||||||| ||| ||||| |||||| | ||| |||||||||||||| ||||||||||||||||||||| |||||    
T  9757099 tcatcctgattgcaacttgtgttaatggcaaatttatttcatctatccatttagtacaggatgctcaacctatatatcaggaagta 9757184  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 15902857 - 15902821
Alignment:
Q  202 taaattatgtgattttctcaaattattatgggtgtcg 238  Q
    |||||||||||||||| |||||||||||| |||||||    
T  15902857 taaattatgtgattttatcaaattattattggtgtcg 15902821  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 16205316 - 16205259
Alignment:
Q  30 tcataacttaaccctttagagaagatgttaattaatacatgtaagaaagcaataagag 87  Q
    |||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  16205316 tcataattcaaccctttagagaacatgttaattaatatatgtaagaaagcaataagag 16205259  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 33327728 - 33327813
Alignment:
Q  285 ggatactcatcccaattgcaacttgttttactggcatatttatcttatccatccatttagta-catgatgctcaacctatatatca 369  Q
    |||||| |||||||| ||||||||||  | |||||| |||||||| | | ||||||| |||| || ||||||||||||||||||||    
T  33327728 ggatacccatcccaactgcaacttgtgctgctggcagatttatctcagctatccattcagtaacaggatgctcaacctatatatca 33327813  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 33352371 - 33352453
Alignment:
Q  285 ggatactcatcccaattgcaacttgttttactggcatatttatcttatccatccatttagta-catgatgctcaacctatata 366  Q
    |||||| |||||||| ||||||||||  | |||||| |||||||| | | ||||||| |||| || |||||||||||||||||    
T  33352371 ggatacccatcccaactgcaacttgtgctgctggcagatttatctcagctatccattcagtaacaggatgctcaacctatata 33352453  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 46191371 - 46191405
Alignment:
Q  204 aattatgtgattttctcaaattattatgggtgtcg 238  Q
    ||||||||||||||||||||||||||| |||||||    
T  46191371 aattatgtgattttctcaaattattattggtgtcg 46191405  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 48202291 - 48202329
Alignment:
Q  200 attaaattatgtgattttctcaaattattatgggtgtcg 238  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  48202291 attaaattatgtgattttctcaaactattatggatgtcg 48202329  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 5339145 - 5339116
Alignment:
Q  200 attaaattatgtgattttctcaaattatta 229  Q
    ||||||||||||||||||||||||||||||    
T  5339145 attaaattatgtgattttctcaaattatta 5339116  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 32804564 - 32804600
Alignment:
Q  202 taaattatgtgattttctcaaattattatgggtgtcg 238  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32804564 taaattatgtgattttctcaaattattaacggtgtcg 32804600  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 9449502 - 9449468
Alignment:
Q  204 aattatgtgattttctcaaattattatgggtgtcg 238  Q
    ||||||||||||||||||||||||||| |||||||    
T  9449502 aattatgtgattttctcaaattattattggtgtcg 9449468  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 2577204 - 2577240
Alignment:
Q  202 taaattatgtgattttctcaaattattatgggtgtcg 238  Q
    |||||||||| |||||||||||||||||| |||||||    
T  2577204 taaattatgtcattttctcaaattattatcggtgtcg 2577240  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 12985425 - 12985392
Alignment:
Q  204 aattatgtgattttctcaaattattatgggtgtc 237  Q
    ||||||||||||||||||||||||||| ||||||    
T  12985425 aattatgtgattttctcaaattattataggtgtc 12985392  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 39954303 - 39954339
Alignment:
Q  202 taaattatgtgattttctcaaattattatgggtgtcg 238  Q
    ||||||||||||||||||||||||||||  |||||||    
T  39954303 taaattatgtgattttctcaaattattagcggtgtcg 39954339  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 5775384 - 5775421
Alignment:
Q  204 aattatgtgattttctcaaattattatgggtgtcgtgt 241  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  5775384 aattatgtgattttctcaaattattaatggtgtcgtgt 5775421  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 7214544 - 7214573
Alignment:
Q  200 attaaattatgtgattttctcaaattatta 229  Q
    ||||||||||||||||||||||||||||||    
T  7214544 attaaattatgtgattttctcaaattatta 7214573  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 33950173 - 33950144
Alignment:
Q  200 attaaattatgtgattttctcaaattatta 229  Q
    ||||||||||||||||||||||||||||||    
T  33950173 attaaattatgtgattttctcaaattatta 33950144  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 10799707 - 10799671
Alignment:
Q  200 attaaattatgtgattttctcaaattattatgggtgt 236  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  10799707 attaaattatgttattttctcaaattatcatgggtgt 10799671  T

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