View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296-Insertion-3 (Length: 493)
Name: NF5296-Insertion-3
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 7588233 - 7588005
Alignment:
| Q |
7 |
agattatagctttggatccagaccgaaaagcttatgaagcaggacttccattcatcaaaaaggctggtgtagaacacaaaattgacttcatagagtctcc |
106 |
Q |
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| T |
7588233 |
agattatagctttggatccagaccgaaaagcttatgaagtaggacttccattcatcaaaaaggctggtgtagaacacaaaattgacttcacagagtctcc |
7588134 |
T |
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| Q |
107 |
agctttaccagttcttgataaactcttagaagatgtgagtattcataacacttggcctaaaacttgtttatgttttggacattgttttaaattgcagttg |
206 |
Q |
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| T |
7588133 |
agctttaccagttcttgataaactcttagaagatgtgagtattcataactcttggcctaaaacttgtttatgttttggacattgttttaaattgcagttg |
7588034 |
T |
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| Q |
207 |
tggttaaactgcgaacctttatgttgcgg |
235 |
Q |
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| T |
7588033 |
tggttaaactgcgaacctttatgttgcgg |
7588005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 351
Target Start/End: Complemental strand, 7587937 - 7587827
Alignment:
| Q |
241 |
tcagcttagtagagctgtttgcaccccctcaagaacggtcctggttacagttgcatatcacaatttaaaactatgactattacttttttgcttaattttc |
340 |
Q |
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| T |
7587937 |
tcagcttagtagagctgtttgcaccccctcaaaaacggtcctggttacggttgcagatcacaatttaaaactatgactattacttttttgcttaattttc |
7587838 |
T |
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| Q |
341 |
aatactactat |
351 |
Q |
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||||||||||| |
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| T |
7587837 |
aatactactat |
7587827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 7587791 - 7587686
Alignment:
| Q |
388 |
caaccatttctaattttggtgtcttcactatttctagtttgttggcaagtgatttgattttgctatatatgtttgcagccttcaaatgatgaaaattttg |
487 |
Q |
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| T |
7587791 |
caaccgtttctaattttagtgtcttcactatttctagtttgttggctagtgatttgattttgctatatatgtttgcagccttcaaatgatgaaaattttg |
7587692 |
T |
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| Q |
488 |
actttg |
493 |
Q |
| |
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|||||| |
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| T |
7587691 |
actttg |
7587686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 42830823 - 42830949
Alignment:
| Q |
21 |
gatccagaccgaaaagcttatgaagcaggacttccattcatcaaaaaggctggtgtagaacacaaaattgacttcatagagtctccagctttaccagttc |
120 |
Q |
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| T |
42830823 |
gatccagacagaaaagcttatgagataggacttccattcataaaaaaggccggtgtcttacacaagattgactacatagagtctccagctttgccggttc |
42830922 |
T |
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| Q |
121 |
ttgataaactcttagaagatgtgagta |
147 |
Q |
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|||||||||||||||| ||||| |||| |
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| T |
42830923 |
ttgataaactcttagatgatgtaagta |
42830949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 33978676 - 33978710
Alignment:
| Q |
239 |
gctcagcttagtagagctgtttgcaccccctcaag |
273 |
Q |
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| T |
33978676 |
gctcagctcagtagagctgtttgcaccccctcaag |
33978710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 9491966 - 9492007
Alignment:
| Q |
242 |
cagcttagtagagctgtttgcaccccctcaagaacggtcctg |
283 |
Q |
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| T |
9491966 |
cagctcagtagagctgtttgcaccccctcaaggacggccctg |
9492007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 1176251 - 1176291
Alignment:
| Q |
243 |
agcttagtagagctgtttgcaccccctcaagaacggtcctg |
283 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||| |||| |
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| T |
1176251 |
agctcagtagagctgtttgcaccccctcaaggacggccctg |
1176291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 11574488 - 11574447
Alignment:
| Q |
242 |
cagcttagtagagctgtttgcaccccctcaagaacggtcctg |
283 |
Q |
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| T |
11574488 |
cagctcagtagagctgtttgcaccccctcaaggacggtcctg |
11574447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 34620211 - 34620251
Alignment:
| Q |
243 |
agcttagtagagctgtttgcaccccctcaagaacggtcctg |
283 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||| |||| |
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| T |
34620211 |
agctcagtagagttgtttgcaccccctcaagaacggccctg |
34620251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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