View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296-Insertion-4 (Length: 469)
Name: NF5296-Insertion-4
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 2742861 - 2742401
Alignment:
| Q |
8 |
gtcttgttctgactgtataggatttgatatatattatccatgtttatgctgtataaactgtgtttcagttgtttgtcacgactctgcaagtaaagagtgc |
107 |
Q |
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| T |
2742861 |
gtcttgttctgactgtataggatttgatatatattatccatgtttatgctgtataaactgtgtttcagttgtttctcacgactctgcaagtaaagagtgc |
2742762 |
T |
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| Q |
108 |
aaaaggaaaatgggtgaggcctatgcattaagtaaagcactgaatggtttagttagtgaagatgatctgaaaaacttgaggaggaaattagacaagggtg |
207 |
Q |
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| T |
2742761 |
aaaagaaaaatgggtgaggcctatgcattaagtaaagcactgaatggtttagttagtgaagatgatctgaaaaacttgaggaggaaattagacaagggtg |
2742662 |
T |
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| Q |
208 |
aagaacaaggaactaaatctaaaagatctaggcagctactaattggctgaggaaattttttattggtttattatgcaagcttggaacattgcttagcatt |
307 |
Q |
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| T |
2742661 |
aagaacaaggaactaaatctaaaagatctaggcagctactaattggctgagg-aattttttattggtttattatgcaagcttggaacattgcttagcatt |
2742563 |
T |
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| Q |
308 |
ttcatgacattttgcatatatgtatataatgtagtgcatattaatattaccagtatcctagacttgtaggagtaacttgagaccaatactagcagctgtt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2742562 |
ttcatgacattttgcatatatgtatataatgtagtgcatattaatattaccagtatcctagacttgtaggagtaacttgagaccaatactagcacctgtt |
2742463 |
T |
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| Q |
408 |
gtcatgtaaggtcttatatcatgaaaaattattctcctcactcttgtaattcagtgcaattc |
469 |
Q |
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| T |
2742462 |
gtcatgtaaggtcttatatcatgaaaaattattctcctcactcttgtaatgtagtgcaattc |
2742401 |
T |
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