View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296-Insertion-5 (Length: 458)
Name: NF5296-Insertion-5
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Original strand, 22819066 - 22819515
Alignment:
| Q |
8 |
gattgatgaagcagaatgcaccgtaacaaacacatgcaccttaacaaaactggggaaaaacataataccaataactttaacagttatacatcttagcatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22819066 |
gattgatgaagcagaatgcaccgtaacaaacacatgcaccttaacaaaactggggaaaaacataataccaataactttaacagttatacatcttagcatt |
22819165 |
T |
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| Q |
108 |
tatctaaagagttgcattttacttacgattttatcagcgatacaacgtgtttcttctgacatgtactctcctgatgacttttgtcgtgcccttatccact |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22819166 |
tatctaaagagttgcattttacttacgattttatcggcgatacaacgtgtttcttctgacatgtactctcctgatgacttttgtcgtgcccttatccact |
22819265 |
T |
|
| Q |
208 |
tctcatggcgtgttggtggggatggaggtgcagctaccgagtcttcaattgattcttgtctttgttttattttctcccgcatcatcttttcttcaagcaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22819266 |
tctcatggcgtgttggtggggatggaggtgcagcta-tgagtcttcaattgattcttgtctttgttttattttctcctgcatcatcttttcttcaagcaa |
22819364 |
T |
|
| Q |
308 |
ctcatatcctccacgagacaagctgtgggggcatctattatgagcctgaatcaatttccccctatttcttttctcctgttataaataacacacaataatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22819365 |
ctcatatcctccacgagacaagctgtgggggcatctattatgagcctgaatcaatttccccctatttcttttctcctgttataaataacacacaataatt |
22819464 |
T |
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| Q |
408 |
aacggaaatactataaataaatttaattgataaactaattattcttaaagt |
458 |
Q |
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| T |
22819465 |
aacagaaatactataaataaatttaattgataaactaattattcttaaagt |
22819515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 41077158 - 41076712
Alignment:
| Q |
8 |
gattgatgaagcagaatgcaccgtaacaaa-cacatgcaccttaacaaaactggggaaaaacataataccaataactttaacagttatacatcttagcat |
106 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077158 |
gattgatgaagcagaatgcaccataacaaaacacatgcacct-aacaaaattggggaaaaacataataccaataactttaacagttatacatcttagcat |
41077060 |
T |
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| Q |
107 |
ttatctaaagagttgcattttacttacgattttatcagcgatacaacgtgtttcttctgacatgtactctcctgatgacttttgtcgtgcccttatccac |
206 |
Q |
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||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||| ||||| ||||||||||||||||||| ||||| ||||||||| |
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| T |
41077059 |
ttatctaaagagttgcattttacttacaattttatctgccatacaacatgtttcttcttacatgcactctcctgatgacttttgccgtgctcttatccac |
41076960 |
T |
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| Q |
207 |
ttctcatggcgtgttggtggggatggaggtgcagctaccgagtcttcaattgattcttgtctttgttttattttctcccgcatcatcttttcttcaagca |
306 |
Q |
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| T |
41076959 |
ttctcatggcgtgttggtggggatggaggtgcaactaccgagtcttcaattgattcttgtctttgttttattttctcttgcatcatctttttttcaagaa |
41076860 |
T |
|
| Q |
307 |
actcatatcctccacgagacaagctgtgggggcatctattatgagcctgaatcaatttccccctatttcttttctcctgttataaataacacacaataat |
406 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |
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| T |
41076859 |
actc--atcctccacgagacaagttgtgggggtatctattacgagcctgaatcaatttccccctatgtattttctcctgttataaataacacacaacaat |
41076762 |
T |
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| Q |
407 |
taacggaaatactataaataaatttaattgataaactaattattcttaaa |
456 |
Q |
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| T |
41076761 |
taacggaaatactataaataaatttaattgataaactaattattcttaaa |
41076712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 103 - 455
Target Start/End: Original strand, 9104571 - 9104926
Alignment:
| Q |
103 |
gcatttatctaaagagttgcattttacttacgattttatcagcgatacaacgtgtttcttctgacatgtactctcctgatgacttttgtcgtgcccttat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
9104571 |
gcatttatctaaagagttgcattttacttacgattttatcggccatacaacgtgtttcttctgacatgtactctcctgatgacttctatcgcgcccttat |
9104670 |
T |
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| Q |
203 |
ccacttctcatggcgtgttggtggggatggaggtgcagctaccga---gtcttcaattgattcttgtctttgttttattttctcccgcatcatcttttct |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
9104671 |
ccacttctcatggcgttttggtggggatggaggtgcagctactgatgagtcttcaattgattcttgtctttgttttaatttctcttgcatcatcttttct |
9104770 |
T |
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| Q |
300 |
tcaagcaactcatatcctccacgagacaagctgtgggggcatctattatgagcctgaatcaatttccccctatttcttttctcctgttataaataacaca |
399 |
Q |
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|||||||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9104771 |
tcaagcaattcatatcctccacgagataagttgtgagggcatctattatgagcctgaatcaatttccccctatttcttttctcctgttataaataataca |
9104870 |
T |
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| Q |
400 |
caataattaacggaaatactataaataaatttaattgataaactaattattcttaa |
455 |
Q |
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||| |||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
9104871 |
caacaattaatggaaatactataaataaatttaaatgataaactaattaatcttaa |
9104926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 334
Target Start/End: Original strand, 39565596 - 39565761
Alignment:
| Q |
169 |
tgtactctcctgatgacttttgtcgtgcccttatccacttctcatggcgtgttggtggggatggaggtgcagctaccgagtcttcaattgattcttgtct |
268 |
Q |
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|||| |||||||||| ||||||||| || || |||| | |||||| |||| |||||| || ||||||||||||||||| || | | ||| |||| | |
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| T |
39565596 |
tgtaatctcctgatggcttttgtcgggctctcttccattgctcatgacgtgctggtggagacggaggtgcagctaccgaatcacctaatgaaccttgctt |
39565695 |
T |
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| Q |
269 |
ttgttttattttctcccgcatcatcttttcttcaagcaactcatatcctccacgagacaagctgtg |
334 |
Q |
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|||||||| ||||| |||| ||||| |||| |||||||||||||| ||||||||||| ||||| |
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| T |
39565696 |
ttgttttaacttctcttgcattatcttctcttggagcaactcatatcccccacgagacaatctgtg |
39565761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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