View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5296-Insertion-7 (Length: 373)
Name: NF5296-Insertion-7
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296-Insertion-7 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 373
Target Start/End: Original strand, 11621645 - 11622010
Alignment:
| Q |
8 |
aaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621645 |
aaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggt |
11621744 |
T |
|
| Q |
108 |
tttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcatactagacatctttaatacacaaattagaactatattta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11621745 |
tttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaattgcatactagacatctttaatacacaaattagaactatattca |
11621844 |
T |
|
| Q |
208 |
tactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621845 |
tactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatt |
11621944 |
T |
|
| Q |
308 |
taattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacacctatg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621945 |
taattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacacctatg |
11622010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 11640136 - 11640491
Alignment:
| Q |
8 |
aaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
11640136 |
aaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaatcatacct---------tcaagctcaagtcaaaggc |
11640226 |
T |
|
| Q |
108 |
tttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcatactagacatctttaatacacaaattagaactatattta |
207 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| ||||| ||||| || ||| ||||| |||| | |||| | ||| ||||||||| ||||||| | | |
|
|
| T |
11640227 |
tttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaattatatacaatacatgctcaatgcacaaattaaaactataatca |
11640325 |
T |
|
| Q |
208 |
tactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagata--ttaagaatacctaa |
305 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||| | |
|
|
| T |
11640326 |
tactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcgtgttgatttatcaaagatattttaaaaatacctga |
11640425 |
T |
|
| Q |
306 |
tttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacaccta |
371 |
Q |
| |
|
||| |||||||||| |||||| ||| | ||||||||| | |||| | |||| ||||||||||||| |
|
|
| T |
11640426 |
tttcattgataatagtctctcaacagtactcctaaaattcagagagtcgctgataatgaacaccta |
11640491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 11605868 - 11605764
Alignment:
| Q |
65 |
cgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaat |
164 |
Q |
| |
|
|||||||| ||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||| |||| |
|
|
| T |
11605868 |
cgtccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaat |
11605769 |
T |
|
| Q |
165 |
tgcat |
169 |
Q |
| |
|
||||| |
|
|
| T |
11605768 |
tgcat |
11605764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 14484668 - 14484598
Alignment:
| Q |
99 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
169 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaattgcat |
14484598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 33735417 - 33735487
Alignment:
| Q |
99 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcat |
33735487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University