View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296-Insertion-9 (Length: 304)
Name: NF5296-Insertion-9
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 16845722 - 16846028
Alignment:
| Q |
8 |
ataccaacaccttctctttactgtgtttagctaaatatacagtcaccaaaaagaaaccatttccatggcgttcaagatcaagaacgtacattctttactc |
107 |
Q |
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| T |
16845722 |
ataccaacaccttctctttactgtgtttagctaaatatacagtcaaccaaaacaaaacatatccatggcgttcaagatcaagaacgtacattctttactc |
16845821 |
T |
|
| Q |
108 |
atcttcatcttgatcttca------------ctatatcacaaactaccgcattaat-cactacagaaacttccacaacaagcaacacattagggcactgg |
194 |
Q |
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| T |
16845822 |
atcttcatcttcatcttcatcttcatcttcactatatcacaaacaaccgcattaattcactacagaaacttccacaacaagcaacacattagggcactgg |
16845921 |
T |
|
| Q |
195 |
atccagcttcaaaaaaccataggcatctcagccatgcacatgcaagtaatgaaagacaacaaagtaatcatcttcgaccgaaccgatttcggtccctcca |
294 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16845922 |
atccagcttcaaaattccataggcatctcagccatgcacatgcaagtaatgaaagacaacaaagtaatcatcttcgaccgaaccgatttcggtccctcca |
16846021 |
T |
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| Q |
295 |
acatctc |
301 |
Q |
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||||||| |
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| T |
16846022 |
acatctc |
16846028 |
T |
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