View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296_high_11 (Length: 267)
Name: NF5296_high_11
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 12283115 - 12283235
Alignment:
| Q |
4 |
ggagaagcaaagggtgatgcatggaaagaattgtggtggccggttaactggaatggacgttggtgtcaagaactctaatggtgttgctattggttttccc |
103 |
Q |
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| T |
12283115 |
ggagaagcaaacggtgatgcatggaaagaattgtggtggccggttaactggaatggatgttggtgtcaagaactgtaatggtgttgctattggttttccc |
12283214 |
T |
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| Q |
104 |
ttttgatggaattaccctaac |
124 |
Q |
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||||| ||||||||||||||| |
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| T |
12283215 |
ttttggtggaattaccctaac |
12283235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 12267389 - 12267512
Alignment:
| Q |
4 |
ggagaagcaaagggtgatgcatggaaagaattgtggtggccggttaactggaatggac---gttggtgtcaagaactctaatggtgttgctattggtttt |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12267389 |
ggagaagcaaacggtgatgcatggaaagaattgtggtggccggttaactggaatggatattgttggtgtcaagaactctaatggtgttgctattggtttt |
12267488 |
T |
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| Q |
101 |
cccttttgatggaattaccctaac |
124 |
Q |
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| T |
12267489 |
cccttttgatggaattaccctaac |
12267512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 12267553 - 12267653
Alignment:
| Q |
165 |
tgcatgcttgttaaagattgatgaactcaattttttaatgcacaacatttactattgtagtatatatacttatcttatacaatctacctaaagtcatgag |
264 |
Q |
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| T |
12267553 |
tgcatgcttgttaaagattgatgaactcaattttttaatgcacaacatttactattgtagtatatatacttatcttatacaatctacctaaagtcatgag |
12267652 |
T |
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| Q |
265 |
t |
265 |
Q |
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| T |
12267653 |
t |
12267653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 12257318 - 12257414
Alignment:
| Q |
24 |
atggaaagaattgtggtggccggttaactggaatggacgttggtgtcaagaactctaatggtgttgctattggttttcccttttgatggaattaccc |
120 |
Q |
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| T |
12257318 |
atggaaagaattatggtggtcggttaactggaatggatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattaccc |
12257414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 12264710 - 12264806
Alignment:
| Q |
24 |
atggaaagaattgtggtggccggttaactggaatggacgttggtgtcaagaactctaatggtgttgctattggttttcccttttgatggaattaccc |
120 |
Q |
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| T |
12264710 |
atggaaagaattatggtggtcggttaactggaatggatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattaccc |
12264806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 12271319 - 12271419
Alignment:
| Q |
24 |
atggaaagaattgtggtggccggttaactggaatggacgttggtgtcaagaactctaatggtgttgctattggttttcccttttgatggaattaccctaa |
123 |
Q |
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| T |
12271319 |
atggaaagagttatggtgaccggttaactggaattgatgttggtacgaagaactctaatggtgctgttattggtattcctgtttggtggaattaccctaa |
12271418 |
T |
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| Q |
124 |
c |
124 |
Q |
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| T |
12271419 |
c |
12271419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 12288005 - 12288081
Alignment:
| Q |
44 |
cggttaactggaatggacgttggtgtcaagaactctaatggtgttgctattggttttcccttttgatggaattaccc |
120 |
Q |
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|||||||||||||| || |||||| ||||||||||||||| | || ||||||| |||| ||| | ||||||||||| |
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| T |
12288005 |
cggttaactggaattgatgttggtaccaagaactctaatggaggtgttattggtattccttttaggtggaattaccc |
12288081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 29198061 - 29198139
Alignment:
| Q |
44 |
cggttaactggaatggacgttggtgtcaagaactctaatggtgttgctattggttttcccttttgatggaattacccta |
122 |
Q |
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|||||||||||||| || |||||| ||||||||||||| |||||| ||||||| |||| |||| ||||||||||||| |
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| T |
29198061 |
cggttaactggaattgatgttggtaccaagaactctaatagtgttgttattggtattcctgtttggtggaattacccta |
29198139 |
T |
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