View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296_high_14 (Length: 248)
Name: NF5296_high_14
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 35543964 - 35543724
Alignment:
| Q |
17 |
aaagtttgcttttgttgttgctttggtaagagacagaaagagatgtacgttgcttcttccatgcgcaagtctttcaaggattccttaaaacttctccaag |
116 |
Q |
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| T |
35543964 |
aaagtttgcttttgttgttgctttggtaagagacagaaagagatgtacgttgcttcttccatgcgcaagtctttcaaggattccttaaaacttctccaag |
35543865 |
T |
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| Q |
117 |
ctgatattcaacacgccaatactctgttagttcttcttctt---------cttcaaaattctattttcattttcccattttcctctctgttttggtaaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35543864 |
ctgatattcaacacgccaatactctgttagttcttcttcttcttcttcttcttcaaaattctattttcattttcccattttcctctctgttttggtaaag |
35543765 |
T |
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| Q |
208 |
tttctatttttgttgtcaaatcacaccttcaattttatttt |
248 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35543764 |
tttctatttttgttgccaaatcacaccttcaattttatttt |
35543724 |
T |
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