View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5296_high_2 (Length: 609)
Name: NF5296_high_2
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 28 - 594
Target Start/End: Complemental strand, 44694926 - 44694350
Alignment:
| Q |
28 |
actcatattacaaacatatacccccaccaacatatcttcctagccgaactatattccaccaatcatcgatcaggtcacaaattagacacaagatcaaaca |
127 |
Q |
| |
|
||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44694926 |
actcatagtacaaaaataaagccccaccaacatatcttcctagccgaactatattccaccaattatcgatcaggtcacaaattagacacaatatcaaaca |
44694827 |
T |
|
| Q |
128 |
cgcaatcttagagcaatgcctttccaataaatcctacaataccaaacactga----------gacactagacacgacattaaagctgacacggtaaccac |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694826 |
tgcaatcttagagcaatgcatttccaataaatcctacaatatcaaacactgacgcaaacacagacactagacacgacattaaagctgacacggtaaccac |
44694727 |
T |
|
| Q |
218 |
atgtgtcagacattgtgtaccggacacgcctttagtctggcatataattgccttatcaatgccaaaactatgaagattttttaatgctaatttgtatgcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694726 |
atgtgtcagacattgtgtaccggacacgcctttagtatggcatataattgccttatcaatgccaaaactatgaagattttttaatgctaatttgtatgcc |
44694627 |
T |
|
| Q |
318 |
taaacattccttatgtataaagaagtgcagaaagacatgaaagcataaaaggaaattaatgatgaaataaaccttgatattgggaatagagtatgccaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694626 |
taaacattccttatgtataaagaagtgcagaaagacatgaaagcataaaaggaaattaatgatgaaataaaccttgatattgggaatagagtatgccaaa |
44694527 |
T |
|
| Q |
418 |
ttccccaagtgagacatgtgtgcatacattcttgcttcaactaaagttaccctacgaagcattctagaaaacgactctctatcaaaccgaatctcttcat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694526 |
ttccccaagtgagacatgtgtgcatacattcttgcttcaactaaagttaccctacgaagcattctagaaaacgactctctatcaaaccgaatctcttcat |
44694427 |
T |
|
| Q |
518 |
cttcattttcatcgtctacctcttcatcaactctacaaacatcacattcatcttcgtcgttatcaccactctcttgt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44694426 |
cttcattttcatcgtctacctcttcatcaactctacaaacatcacattcatctccgtcgttatcaccactctcttgt |
44694350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11269006 - 11269050
Alignment:
| Q |
1 |
acctaaaaccataagacaatgcatcaaactcatattacaaacata |
45 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||| |||| |
|
|
| T |
11269006 |
acctaaaaccttaagacaatgccttaaactcatattacaagcata |
11269050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University