View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5296_high_3 (Length: 594)

Name: NF5296_high_3
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5296_high_3
NF5296_high_3
[»] chr3 (5 HSPs)
chr3 (284-573)||(42898201-42898478)
chr3 (6-235)||(42897974-42898203)
chr3 (498-534)||(32711271-32711307)
chr3 (497-534)||(2312985-2313022)
chr3 (501-534)||(42896185-42896218)
[»] chr5 (3 HSPs)
chr5 (498-534)||(37322613-37322649)
chr5 (498-531)||(4409398-4409431)
chr5 (498-534)||(1023715-1023751)
[»] chr4 (2 HSPs)
chr4 (498-534)||(30206537-30206573)
chr4 (498-534)||(26066412-26066448)
[»] chr8 (3 HSPs)
chr8 (500-534)||(27789322-27789356)
chr8 (502-534)||(8337212-8337244)
chr8 (498-534)||(8793762-8793798)
[»] chr7 (1 HSPs)
chr7 (498-534)||(39153356-39153392)
[»] chr6 (3 HSPs)
chr6 (498-534)||(24986001-24986037)
chr6 (498-534)||(28630796-28630832)
chr6 (502-534)||(30714128-30714160)
[»] chr2 (2 HSPs)
chr2 (498-534)||(7943508-7943544)
chr2 (498-530)||(45651049-45651081)
[»] chr1 (3 HSPs)
chr1 (498-534)||(11386198-11386234)
chr1 (498-534)||(49944876-49944912)
chr1 (498-534)||(50155367-50155403)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 284 - 573
Target Start/End: Original strand, 42898201 - 42898478
Alignment:
Q  284 ataagcaaaatgtttaaaaggcggttacctcatcagaatgattaacctcgtgtccagatgccgcgattatgtttaagtaaagagtcttaatatcgcctcc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898201 ataagcaaaatgtttaaaaggcggttacctcatcagaatgattaacctcgtgtccagatgccgcgattatgtttaagtaaagagtcttaatatcgcctcc 42898300  T
Q  384 tgcactatcagctgggaaaacactctgcaagcaaagacagatatttgcatgaaacatatgtatcactttcaaattcagtgaaccaagctaatattttact 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898301 tgcactatcagctgggaaaacactctgcaagcaaagacagatatttgcatgaaacatatgtatcactttcaaattcagtgaaccaagctaatattttact 42898400  T
Q  484 ctctatattatacactatattatagaccagatacatcaattattcaatgaaaaaactattctaatgacctctgaaatcaattcatgactc 573  Q
    ||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898401 ct------------ctatattatagaccagatacatcaattattcaatgaaaaaactattctaatgacctctgaaatcaattcatgactc 42898478  T

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Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 42897974 - 42898203
Alignment:
Q  6 aggagcacagactttccagatagttcatcgtttaatctcttgagaatctcaaagcattcgtcaagagaaacaagcaaggtttcagcaaattctacccatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  42897974 aggagcacagactttccagatagttcatcgtttaatctcttgagaatctcaaagcatccgtcaagagaaacaggcaaggtttctgcaaattctacccatt 42898073  T
Q  106 tcaacacctaaatacaaagaatgtaaaactcagaattactaaccagttaagtgaaaaacagatatgttctttggagcatagcaattttggtacgagcgct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898074 tcaacacctaaatacaaagaatgtaaaactcagaattactaaccagttaagtgaaaaacagatatgttctttggagcatagcaattttggtacgagcgct 42898173  T
Q  206 taattcagattccaacaatagtatttgata 235  Q
    ||||||||||||||||||||||||||||||    
T  42898174 taattcagattccaacaatagtatttgata 42898203  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 32711271 - 32711307
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    |||||||||||||||||||||||||||||||||||||    
T  32711271 ctatattatagaccagatacatcaattattcaatgaa 32711307  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 534
Target Start/End: Original strand, 2312985 - 2313022
Alignment:
Q  497 actatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  2312985 actatattatatatcagatacatcaattattcaatgaa 2313022  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 534
Target Start/End: Complemental strand, 42896218 - 42896185
Alignment:
Q  501 tattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||||||||||| ||||||||||||    
T  42896218 tattatagaccagatacatcagttattcaatgaa 42896185  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 37322613 - 37322649
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37322613 ctatattttagaccagatacatcaattattcaatgaa 37322649  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 531
Target Start/End: Original strand, 4409398 - 4409431
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaat 531  Q
    ||||||||||||||| ||||||||||||||||||    
T  4409398 ctatattatagaccaaatacatcaattattcaat 4409431  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 1023715 - 1023751
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  1023715 ctatattatagaccacatacatcatttattcaatgaa 1023751  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 30206537 - 30206573
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    |||||||||| ||||||||||||||||||||||||||    
T  30206537 ctatattataaaccagatacatcaattattcaatgaa 30206573  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 26066448 - 26066412
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  26066448 ctatattctagaccggatacatcaattattcaatgaa 26066412  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 534
Target Start/End: Complemental strand, 27789356 - 27789322
Alignment:
Q  500 atattatagaccagatacatcaattattcaatgaa 534  Q
    |||||||| ||||||||||||||||||||||||||    
T  27789356 atattatataccagatacatcaattattcaatgaa 27789322  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 534
Target Start/End: Original strand, 8337212 - 8337244
Alignment:
Q  502 attatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||| |||||||||||||||||||    
T  8337212 attatagaccagacacatcaattattcaatgaa 8337244  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 8793798 - 8793762
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  8793798 ctatattatagaccaaatacatcaattactcaatgaa 8793762  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 39153356 - 39153392
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  39153356 ctatattatagaccaaatacatcaattactcaatgaa 39153392  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 24986001 - 24986037
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  24986001 ctatattatagaccatatacatcaattatccaatgaa 24986037  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 28630832 - 28630796
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  28630832 ctatattatagacaagatacatcaattactcaatgaa 28630796  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 534
Target Start/End: Original strand, 30714128 - 30714160
Alignment:
Q  502 attatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||| |||||||||||||||||||    
T  30714128 attatagaccagaaacatcaattattcaatgaa 30714160  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 7943508 - 7943544
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  7943508 ctatattgtagacaagatacatcaattattcaatgaa 7943544  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 45651049 - 45651081
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaa 530  Q
    ||||| |||||||||||||||||||||||||||    
T  45651049 ctataatatagaccagatacatcaattattcaa 45651081  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 11386234 - 11386198
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  11386234 ctatattctagaccagaaacatcaattattcaatgaa 11386198  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 49944912 - 49944876
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  49944912 ctatattctagacaagatacatcaattattcaatgaa 49944876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 50155367 - 50155403
Alignment:
Q  498 ctatattatagaccagatacatcaattattcaatgaa 534  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  50155367 ctatattatagaccaaatacatcaattactcaatgaa 50155403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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