View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5296_low_1 (Length: 737)

Name: NF5296_low_1
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5296_low_1
NF5296_low_1
[»] chr6 (7 HSPs)
chr6 (18-477)||(29601630-29602089)
chr6 (599-716)||(29602126-29602241)
chr6 (598-726)||(12791135-12791264)
chr6 (480-726)||(16805275-16805514)
chr6 (495-545)||(12791037-12791088)
chr6 (484-522)||(12790459-12790497)
chr6 (364-394)||(16805813-16805843)
[»] chr7 (6 HSPs)
chr7 (480-726)||(14715616-14715855)
chr7 (480-549)||(9756823-9756893)
chr7 (678-726)||(9756675-9756723)
chr7 (598-663)||(9756749-9756814)
chr7 (484-547)||(4429812-4429876)
chr7 (357-399)||(14715281-14715323)
[»] chr5 (3 HSPs)
chr5 (480-726)||(22375748-22375987)
chr5 (484-547)||(19314013-19314077)
chr5 (357-399)||(22375413-22375455)
[»] chr2 (2 HSPs)
chr2 (480-726)||(1919762-1920001)
chr2 (357-399)||(1920292-1920334)
[»] chr4 (2 HSPs)
chr4 (630-720)||(17732122-17732212)
chr4 (480-545)||(17732313-17732379)
[»] chr1 (4 HSPs)
chr1 (630-720)||(18475855-18475945)
chr1 (480-545)||(18476046-18476112)
chr1 (484-547)||(22011516-22011580)
chr1 (336-399)||(18476409-18476472)
[»] chr8 (3 HSPs)
chr8 (484-547)||(19466527-19466591)
chr8 (484-547)||(19564208-19564272)
chr8 (357-399)||(22649558-22649600)
[»] chr3 (4 HSPs)
chr3 (198-329)||(16205565-16205696)
chr3 (79-194)||(16205397-16205509)
chr3 (484-531)||(16206363-16206411)
chr3 (489-522)||(16206442-16206475)


Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 29601630 - 29602089
Alignment:
Q  18 attaatatatacctatttacgattccaagggatacatgctagtactatatattgataaatcatagttccataaagtcaaaacggaatcccgatccattgt 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  29601630 attaatatatacctatttacgattccaagggatacatactagtactatatattgataaatcatagttccataaagacaaaacggaatcccgatcgattgt 29601729  T
Q  118 gccttgttatttgagttgtaataatttggtttgttaatctctagtgtgaatcatgatatgatatgaatacatgggttctatttatgactagttgtctttt 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29601730 gccttgttatttgagttgaaataatttggtttgttaatctctagtgtgaatcatggtatgatatgaatacatgggttctatttatgactagttgtctttt 29601829  T
Q  218 tgattggttctcttgtacaaggcctaattgacagtatccatgagctacttgctaataatattagtttcctcaaaccccatgtctgattggtgctctctca 317  Q
    | |||| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  29601830 ttattgtttctcttgtacaaggcctaattgacagtatccaagagccacttgcttataatattagtttcctaaacccccatgtctgattggtgctctctca 29601929  T
Q  318 ccctctcgtttgattataatttgtgttatatcattgactatattggcttaattattttgttgtatttgtgttttctctctgannnnnnnnattggcaggt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||        ||||||||||    
T  29601930 ccctctcgtttgattataatttgtgttatatcattgactatattgccttaattattttgttgtatttgtgttttcgctctgattttttttattggcaggt 29602029  T
Q  418 tcgtcatcgattttgtactacaagatgaagggatataaatgttggtgcttaagtattttt 477  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  29602030 tagtcatcgattttgtaccacaagatgaagggatataaatgttggtgcttaagttttttt 29602089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 599 - 716
Target Start/End: Original strand, 29602126 - 29602241
Alignment:
Q  599 ttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaaatccaaaaaatttattatgtatgtaattttgaaga 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  29602126 ttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaaatccaaaaaatttatta--tatgtaattttgaaga 29602223  T
Q  699 tattattttcattgtgat 716  Q
    | ||||||||||||||||    
T  29602224 tgttattttcattgtgat 29602241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 598 - 726
Target Start/End: Original strand, 12791135 - 12791264
Alignment:
Q  598 tttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaaatccaaaaaat-ttattatgtatgtaattttgaa 696  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||| |||||  |||||||| |||||| |||||||  ||||||||||||||||||||||    
T  12791135 tttgaagatgttatattgaatgtgatcaatgataattgtcattatctctaagcgtattcattagaaattcaaaaaaaattattatgtatgtaattttgaa 12791234  T
Q  697 gatattattttcattgtgatcaatgatgat 726  Q
    ||| ||| ||||||||||||||||||||||    
T  12791235 gatgttactttcattgtgatcaatgatgat 12791264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 480 - 726
Target Start/End: Complemental strand, 16805514 - 16805275
Alignment:
Q  480 agaagaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgttgatgcttaagnnnnnnnnnnatcctgatag 578  Q
    |||||||||  |||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| ||| |||||  |           ||||||| |    
T  16805514 agaagaatatagatgatatggacgaagaatttcaagatttggaagaacaagatgaagatatataaat-ttggtgctt--gtttttttgttttcctgatgg 16805418  T
Q  579 atattggtaatcactttgatttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaaatccaaaaaatttat 678  Q
    ||||||||  |||||||||     |||||||||||| | ||||||  ||||||||||||||||| ||||| |||||| || |||| ||||||||| ||||    
T  16805417 atattggtggtcactttga-----agatgttatattgaatgtgattaatgataattgtcattatctctaagggtatttattagaattccaaaaaaattat 16805323  T
Q  679 tatgtatgtaattttgaagatattattttcattgtgatcaatgatgat 726  Q
    ||||||||||||| || | || ||| ||||||||||||||||||||||    
T  16805322 tatgtatgtaattgtgtaaatgttactttcattgtgatcaatgatgat 16805275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 545
Target Start/End: Original strand, 12791037 - 12791088
Alignment:
Q  495 atattgacgaagaatttcaagattt-ggagcacaagatgaagagatataaat 545  Q
    ||||||||||||||||||||||||| | || ||||||||||||||| |||||    
T  12791037 atattgacgaagaatttcaagatttagaagaacaagatgaagagatgtaaat 12791088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 522
Target Start/End: Original strand, 12790459 - 12790497
Alignment:
Q  484 gaataatgatgatattgacgaagaatttcaagatttgga 522  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  12790459 gaataatgatgatatggatgaagaatttcaagatttgga 12790497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 394
Target Start/End: Complemental strand, 16805843 - 16805813
Alignment:
Q  364 cttaattattttgttgtatttgtgttttctc 394  Q
    |||||||||||||||||||||||||||||||    
T  16805843 cttaattattttgttgtatttgtgttttctc 16805813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 480 - 726
Target Start/End: Original strand, 14715616 - 14715855
Alignment:
Q  480 agaagaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgttgatgcttaagnnnnnnnnnnatcctgatag 578  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||  |           ||||||| |    
T  14715616 agaagaatattgatgatatggacgaagaatttcaagatttggaagaacaagatgaagatatataaat-ttgatgctt--gtttttttgttttcctgatgg 14715712  T
Q  579 atattggtaatcactttgatttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaaatccaaaaaatttat 678  Q
    ||||||||  |||| ||||     |||||||||||| | ||||||  ||||||||||||||||| ||||| ||||||||| |||||||||||||  ||||    
T  14715713 atattggtggtcacgttga-----agatgttatattgaatgtgattaatgataattgtcattatctctaagggtattcattagaaatccaaaaatattat 14715807  T
Q  679 tatgtatgtaattttgaagatattattttcattgtgatcaatgatgat 726  Q
    || |||||||||| || | || ||| ||||||||||||||||||||||    
T  14715808 tacgtatgtaattgtgtaaatgttactttcattgtgatcaatgatgat 14715855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 480 - 549
Target Start/End: Complemental strand, 9756893 - 9756823
Alignment:
Q  480 agaagaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaatgttg 549  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  9756893 agaagaataataatgatattgacaaagaatttcaagatttggaagcacaagatgaagagatataaatgttg 9756823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 678 - 726
Target Start/End: Complemental strand, 9756723 - 9756675
Alignment:
Q  678 ttatgtatgtaattttgaagatattattttcattgtgatcaatgatgat 726  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  9756723 ttatgtatgtaattttgaagatgttattttcattctgatcaatgatgat 9756675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 663
Target Start/End: Complemental strand, 9756814 - 9756749
Alignment:
Q  598 tttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaa 663  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||| ||  |||||||| ||||    
T  9756814 tttgaagatgttatattgattgtgaccaatgataattgtcattatatccaagagtattcattagaa 9756749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 4429876 - 4429812
Alignment:
Q  484 gaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaatgt 547  Q
    |||||||||||||||  | ||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  4429876 gaataatgatgatatcaatgaagaatttgaagatttggaagcacaagatgaagagatatagatgt 4429812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 14715281 - 14715323
Alignment:
Q  357 atattggcttaattattttgttgtatttgtgttttctctctga 399  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  14715281 atattgccttaattattttgttgcatttgtgttttctcactga 14715323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 480 - 726
Target Start/End: Original strand, 22375748 - 22375987
Alignment:
Q  480 agaagaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgttgatgcttaagnnnnnnnnnnatcctgatag 578  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| ||| |||||  |           ||||||| |    
T  22375748 agaagaatattgatgatatggacgaagaatttcaagatttggaagaacaagatgaagatatataaat-ttggtgctt--gtttttttgttttcctgatgg 22375844  T
Q  579 atattggtaatcactttgatttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaaatccaaaaaatttat 678  Q
    ||||||||  ||||||||     ||||||||||||| | ||||||  ||||||||||||||||| ||||| ||||||||| |||||||||||||  ||||    
T  22375845 atattggtggtcactttg-----aagatgttatattgaatgtgattaatgataattgtcattatctctaagggtattcattagaaatccaaaaatattat 22375939  T
Q  679 tatgtatgtaattttgaagatattattttcattgtgatcaatgatgat 726  Q
    || |||||||||| || | || ||| ||||||||||||||||||||||    
T  22375940 tacgtatgtaattgtgtaaatgttactttcattgtgatcaatgatgat 22375987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 19314013 - 19314077
Alignment:
Q  484 gaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaatgt 547  Q
    |||||||||||||||  | ||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  19314013 gaataatgatgatatcaatgaagaatttgaagatttggaagcacaagatgaagagatatagatgt 19314077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 22375413 - 22375455
Alignment:
Q  357 atattggcttaattattttgttgtatttgtgttttctctctga 399  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  22375413 atattgccttaattattttgttgcatttgtgttttctcactga 22375455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 480 - 726
Target Start/End: Complemental strand, 1920001 - 1919762
Alignment:
Q  480 agaagaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgttgatgcttaagnnnnnnnnnnatcctgatag 578  Q
    ||||||||| ||||||||| ||||||||||||||||||||| | | |||||||||||| |||||||| ||| |||||  |           ||||||| |    
T  1920001 agaagaatattgatgatatggacgaagaatttcaagatttgaaagaacaagatgaagatatataaat-ttggtgctt--gtttttttgttttcctgatgg 1919905  T
Q  579 atattggtaatcactttgatttgaagatgttatattaattgtgatcgatgataattgtcattatatctaaaggtattcataagaaatccaaaaaatttat 678  Q
    ||||||||  |||||||||     |||||||||||| | ||||||  ||||||||||||||||| || || ||||||||| |||||||||||||  ||||    
T  1919904 atattggtggtcactttga-----agatgttatattgaatgtgattaatgataattgtcattatctccaagggtattcattagaaatccaaaaatattat 1919810  T
Q  679 tatgtatgtaattttgaagatattattttcattgtgatcaatgatgat 726  Q
    || |||||||||| || | || ||| ||||||||||||||||||||||    
T  1919809 tacgtatgtaattgtgtaaatgttactttcattgtgatcaatgatgat 1919762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 1920334 - 1920292
Alignment:
Q  357 atattggcttaattattttgttgtatttgtgttttctctctga 399  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  1920334 atattgccttaattattttgttgcatttgtgttttctcactga 1920292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 630 - 720
Target Start/End: Complemental strand, 17732212 - 17732122
Alignment:
Q  630 taattgtcattatatctaaaggtattcataagaaatccaaaaaatttattatgtatgtaattttgaagatattattttcattgtgatcaat 720  Q
    ||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||    
T  17732212 taattgtcaatatctctaagggtattcattagaaatccaaaaaatttattatgtatgtaattttgaagatgttactttcggtgtgatcaat 17732122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 17732379 - 17732313
Alignment:
Q  480 agaagaataatgatgatattgacgaagaatttcaagatttg-gagcacaagatgaagagatataaat 545  Q
    ||||||||||||||||||| |||||||||||||||||||||  || |||||||||||||||||||||    
T  17732379 agaagaataatgatgatatggacgaagaatttcaagatttgaaagtacaagatgaagagatataaat 17732313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 630 - 720
Target Start/End: Complemental strand, 18475945 - 18475855
Alignment:
Q  630 taattgtcattatatctaaaggtattcataagaaatccaaaaaatttattatgtatgtaattttgaagatattattttcattgtgatcaat 720  Q
    ||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||    
T  18475945 taattgtcaatatctctaagggtattcattagaaatccaaaaaatttattatgtatgtaattttgaagatgttactttcggtgtgatcaat 18475855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 18476112 - 18476046
Alignment:
Q  480 agaagaataatgatgatattgacgaagaatttcaagatttg-gagcacaagatgaagagatataaat 545  Q
    ||||||||||||||||||| |||||||||||||||||||||  || |||||||||||||||||||||    
T  18476112 agaagaataatgatgatatggacgaagaatttcaagatttgaaagtacaagatgaagagatataaat 18476046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 22011516 - 22011580
Alignment:
Q  484 gaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgt 547  Q
    |||||||||||||||  | ||||||||| |||||||||| |||||||||||||||||||||||||    
T  22011516 gaataatgatgatatcaatgaagaatttgaagatttggaagcacaagatgaagagatataaatgt 22011580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 18476472 - 18476409
Alignment:
Q  336 atttgtgttatatcattgactatattggcttaattattttgttgtatttgtgttttctctctga 399  Q
    ||||||||||| |||  ||| ||| || |||||||||||||||| |||||||||||||| ||||    
T  18476472 atttgtgttatctcacagacaatactgccttaattattttgttgcatttgtgttttctcactga 18476409  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 19466527 - 19466591
Alignment:
Q  484 gaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgt 547  Q
    |||||||||||||||  | | ||||||| |||||||||| |||||||||||||||||||||||||    
T  19466527 gaataatgatgatatcaatgcagaatttgaagatttggaagcacaagatgaagagatataaatgt 19466591  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 19564208 - 19564272
Alignment:
Q  484 gaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgt 547  Q
    |||||||||||||||  | | ||||||| |||||||||| |||||||||||||||||||||||||    
T  19564208 gaataatgatgatatcaatgcagaatttgaagatttggaagcacaagatgaagagatataaatgt 19564272  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 22649600 - 22649558
Alignment:
Q  357 atattggcttaattattttgttgtatttgtgttttctctctga 399  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  22649600 atattgccttaattattttgttgcatttgtgttttctcactga 22649558  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 16205565 - 16205696
Alignment:
Q  198 tttatgactagttgtctttttgattggttctcttgtacaaggcctaattgacagtatccatgagctacttgctaataatattagtttcctcaaaccccat 297  Q
    |||||| | ||||| |||||  |||| || ||||||| ||||| ||||||  |||||| | |||  | ||||  ||||||||||||||||||  |||| |    
T  16205565 tttatgcccagttgccttttatattgtttgtcttgtaaaaggcttaattggtagtatctaagagtcatttgcacataatattagtttcctcacccccctt 16205664  T
Q  298 gtctgattggtgctctctcaccctctcgtttg 329  Q
    |||||||| ||| |||| ||||||||||||||    
T  16205665 gtctgatttgtgatctcacaccctctcgtttg 16205696  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 16205397 - 16205509
Alignment:
Q  79 atagttccataaagtcaaaacggaatcccgatccattgtgccttgttatttgagttgtaataatttggtttgttaatctctagtgtgaatcatgatatga 178  Q
    ||||||||||||||  | || |||||||| || | ||||||||||||||||  | || || ||||||  ||||||||||||| ||||||||| | |||||    
T  16205397 atagttccataaag--ataatggaatcccaattcgttgtgccttgttatttcggatgaaaaaatttgtcttgttaatctctattgtgaatcacgttatga 16205494  T
Q  179 tatgaatacatgggtt 194  Q
     || ||||||||||||    
T  16205495 -attaatacatgggtt 16205509  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 531
Target Start/End: Original strand, 16206363 - 16206411
Alignment:
Q  484 gaataatgatgatattgacgaagaatttcaagatttgg-agcacaagat 531  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  16206363 gaataatgatgatattgaggaagattttcaagatttggaagcacaagat 16206411  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 522
Target Start/End: Original strand, 16206442 - 16206475
Alignment:
Q  489 atgatgatattgacgaagaatttcaagatttgga 522  Q
    |||||||||||||||||||||||||||| |||||    
T  16206442 atgatgatattgacgaagaatttcaagacttgga 16206475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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