View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296_low_19 (Length: 207)
Name: NF5296_low_19
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_low_19 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 10254 - 10429
Alignment:
| Q |
14 |
cagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagatatcagttttgtacatttgctttggaagcctat |
113 |
Q |
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| T |
10254 |
cagagagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagatatcagtgttgtacatttgctttggaagcctat |
10353 |
T |
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| Q |
114 |
gttatttttcagataaacaactttatgagattgagtgcggggtagaagcatcgggttacgaatttgtatgagttgt |
189 |
Q |
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| T |
10354 |
gttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgt |
10429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 6268 - 6427
Alignment:
| Q |
12 |
agcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttggaagc |
109 |
Q |
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| T |
6268 |
agcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc |
6367 |
T |
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| Q |
110 |
ctatgttatttttcagataaacaactttatgagattgagtgcggggtagaagcatcgggt |
169 |
Q |
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| T |
6368 |
ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggt |
6427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 48958538 - 48958387
Alignment:
| Q |
40 |
agtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttggaagcctatgttatttttcagataaacaacttt |
137 |
Q |
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| T |
48958538 |
agtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaacttt |
48958439 |
T |
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| Q |
138 |
atgagattgagtgcggggtagaagcatcgggttacgaatttgtatgagttgt |
189 |
Q |
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| T |
48958438 |
atgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgt |
48958387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 48912106 - 48912269
Alignment:
| Q |
16 |
gagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttggaagcctat |
113 |
Q |
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| T |
48912106 |
gagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaat |
48912205 |
T |
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| Q |
114 |
gttatttttcagataaacaactttatgagattgagtgcggggtagaagcatcgggttacgaatt |
177 |
Q |
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| T |
48912206 |
gtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt |
48912269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 48965748 - 48965589
Alignment:
| Q |
12 |
agcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttggaagc |
109 |
Q |
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||||||||| ||| || ||||||| ||||| ||||| |||||| ||||||||||||| | |||||| ||| ||||| |||||||| ||||||||||| |
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| T |
48965748 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagc |
48965649 |
T |
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| Q |
110 |
ctatgttatttttcagataaacaactttatgagattgagtgcggggtagaagcatcgggt |
169 |
Q |
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| T |
48965648 |
ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggt |
48965589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 12589943 - 12590099
Alignment:
| Q |
29 |
agagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttggaagcctatgttatttttcaga |
126 |
Q |
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|||||| ||||| ||||| ||||||||||||||||| |||| ||||||||||| || || |||||||| |||||||| ||| |||| ||||| ||||| |
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| T |
12589943 |
agagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcaga |
12590042 |
T |
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| Q |
127 |
taaacaactttatgagattgagtgcggggtagaagcatcgggttacgaatttgtatg |
183 |
Q |
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| T |
12590043 |
taaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatg |
12590099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 12483238 - 12483380
Alignment:
| Q |
29 |
agagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttggaagcctatgttatttttcaga |
126 |
Q |
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|||||| |||||| ||||||||||||| |||||||| |||| |||| ||| | ||||| |||||||| |||||||| |||||||| |||| || || |
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| T |
12483238 |
agagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctga |
12483337 |
T |
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| Q |
127 |
taaacaactttatgagattgagtgcggggtagaagcatcgggt |
169 |
Q |
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| T |
12483338 |
taaacagctttacgaaatttcatgcggaatagaagcatcgggt |
12483380 |
T |
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