View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296_low_4 (Length: 453)
Name: NF5296_low_4
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_low_4 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 7471 - 7067
Alignment:
| Q |
18 |
ataaattagtttacatttctttagagcataatgaacataatcttccttcgnnnnnnn-tgaacaaaatctaaataactcgctttagaaaactttcatctc |
116 |
Q |
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| T |
7471 |
ataaattagtttacatttctttagagcataatgaacataatcttccttcgaaaaaaaatgaacaaaatctaaataactcgctttagaaaactttcatctc |
7372 |
T |
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| Q |
117 |
aataatccttggtggagatgctctttaaaaagaataaactttttctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgat |
216 |
Q |
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| T |
7371 |
aataatccttggtggagatgctctttaaaaagaataaactttttctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgat |
7272 |
T |
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| Q |
217 |
catgttttctgtcaaatgtgattttgctctttg-ctattattacacaagtgtttcatgctacatccaacatactccttaacacaccgctctttatttata |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7271 |
catgttttctgtcaaatgtgattttgctctttgcctattattacacaagtgtttcatgctacatccaacatactccttaacaaaccgctctttatttata |
7172 |
T |
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| Q |
316 |
tttgagtctatcaaattcataaacannnnnnnnnnnnnnnctattattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaa |
415 |
Q |
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| T |
7171 |
tttgagtctatcaaattcataatcatttttaattttttttctattattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaa |
7072 |
T |
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| Q |
416 |
ccaga |
420 |
Q |
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| T |
7071 |
ccaga |
7067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 11094 - 11053
Alignment:
| Q |
382 |
ttatctcaattggttcctttttcatcattct-gaaccagaaa |
422 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||| |
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| T |
11094 |
ttatctcaattggtgcctttttcatcattctggaaccagaaa |
11053 |
T |
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