View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296_low_5 (Length: 411)
Name: NF5296_low_5
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 12267682 - 12268080
Alignment:
| Q |
8 |
aatactgttgtactatttcatttctcaagttttaatttcttgtaaataacaacatttttaacggatttacttatttgttttctttgtaatttgttcttta |
107 |
Q |
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| T |
12267682 |
aatactgttgtactatttcatttctcaagttttaatttcttgtaaataacaacatttttaacagagttacttatttgttttctttgtaatttgttcttca |
12267781 |
T |
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| Q |
108 |
ttgtattataattgaatttaacatctcgaaaagaaaaattaacggctaataaaaagtagacacatattcaatttagtccctcgcaatttgttcacgactc |
207 |
Q |
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| T |
12267782 |
ttgtattataattgaatttaacatctcgaaaagaaaaattaacggctaataaaaagtagactaatattcaatttagtccctcgcaatttgttcaccactc |
12267881 |
T |
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| Q |
208 |
aattcagttgatcaaag--gtggtgtgaagcaac-----------ttcatggttatcactaatgggtactatacgtacaaagacactccaatgtttaact |
294 |
Q |
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| T |
12267882 |
aattcagttgatcgaaggtgtggtgtgaagcaacttcaaaggtggttcatggttatcactaatgggtactatacgttcaaagacactccaatgtttaact |
12267981 |
T |
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| Q |
295 |
cagtgaggtttcaaggtgattttaagtgatttctcaaaatgagagtgtgtaccttgtttcagcatggatatatcagttacgttgtacccttatggcttg |
393 |
Q |
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| T |
12267982 |
cagtgaggtttcaaggtgattttaagggatttctcaaaatgagagtgtgtaccttatttcagcatggatatatcaattacgttgtacccttatggcttg |
12268080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 12283325 - 12283484
Alignment:
| Q |
8 |
aatactgttgtactatttcatttctcaagttttaatttcttgtaaataacaacatttttaac--ggatttacttatttgttttctttgtaatttgttctt |
105 |
Q |
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| T |
12283325 |
aatactattgtactatttcatttctcaagttttaatttcttgaaaataccaacattattaacatagagttacttatttgttttctttgtaagttcctgtt |
12283424 |
T |
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| Q |
106 |
tattgtattataattgaatttaacatctcgaaaagaaaaattaacggctaataaaaagtagac |
168 |
Q |
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|||| || |||||||||||||||||||| |||||||||||||| |||||||| |||||||| |
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| T |
12283425 |
tatt---ttctaattgaatttaacatctcggaaagaaaaattaacagctaataagaagtagac |
12283484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 29198291 - 29198346
Alignment:
| Q |
8 |
aatactgttgtactatttcatttctcaagttttaatttcttgtaaataacaacatt |
63 |
Q |
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| T |
29198291 |
aatactgtggtactatttcatttctcacgttttaatttattgtaaataccaacatt |
29198346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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