View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296_low_6 (Length: 372)
Name: NF5296_low_6
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 11621649 - 11621300
Alignment:
| Q |
19 |
attttgtgtctagctttcatggtcttaatgccgaaaagaatcttgtgaaaataagatctgatttttccttgttgatgatcgacgaggcgaagatagtatt |
118 |
Q |
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| T |
11621649 |
attttgtgtctagctttcatggtcttaatgccgaaaagaatcttgtgaaaataagatctgatttttccttgttgatgatcgacaaggcgaagatagtatt |
11621550 |
T |
|
| Q |
119 |
catctatagcatcttccatgtcttgagcaataactctaacccttttaacccatactttgagttcagggtctttgtcttccattgaatcagctaccatcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11621549 |
catctatagcatcttccatgtcttgagcaataactctaacccttttaacccatactttgagttcagggtctttgtcttccattgaatcagctgccatcaa |
11621450 |
T |
|
| Q |
219 |
gatggccttgtggcgttcgagttcgtctttgatgtattgaacatcttcacggacgcctctttgtagatttacctcttcttgaagtaaccaagttagcttc |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11621449 |
gatggccttgtggcgttcgagttcgtcgttgatgtattgaacatcttcacggacgcctctttgtagatttacctcttcttgaagtaaccaagttagcttc |
11621350 |
T |
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| Q |
319 |
tccaacaaaaatgatactgaactctctgccatttttattttcttctcact |
368 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11621349 |
tccaacaaaaatgatactgaactctctgccattcttattttcttctcact |
11621300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 11640142 - 11639796
Alignment:
| Q |
17 |
caattttgtgtctagctttcatggtcttaatgccgaaaagaatcttgtgaaaataagatctgatttttccttgttgatgatcgacgaggcgaagatagta |
116 |
Q |
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| T |
11640142 |
caattttgcgtctagctttcatggtcttaattccaaaaacaatcttgtgataagaagatttgattttgccttgttgatgatcgacaaggcgaagatagta |
11640043 |
T |
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| Q |
117 |
ttcatctatagcatcttccatgtcttgagcaataactctaacccttttaacccatactttgagttcagggtctttgtcttccattgaatcagctaccatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
11640042 |
ttcatctatagcatcttccatgtcttgagcaatatctcttactcttttaacccatactttgagttcagggtctttgtcttccaatgaatcagctaacatc |
11639943 |
T |
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| Q |
217 |
aagatggccttgtggcgttcgagttcgtctttgatgtattgaacatcttcacggacgcctctttgtagatttacctcttcttgaagtaaccaagttagct |
316 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||| |
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| T |
11639942 |
aagatggacttgtggcgttcaagttcgtctttgatgtattgaacatcttcacggactcctctttgtagatttacttcctcttgaagtaaccatgttagct |
11639843 |
T |
|
| Q |
317 |
tctccaacaaaaatgatactgaactctctgccatttttattttcttc |
363 |
Q |
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| ||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
11639842 |
tgtccaataaaaatgatactgaactgtctgccatttttattttcttc |
11639796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 23 - 353
Target Start/End: Original strand, 11605925 - 11606258
Alignment:
| Q |
23 |
tgtgtctagctttcatggtcttaatgccgaaaagaatcttgtgaaaataaga---tctgatttttccttgttgatgatcgacgaggcgaagatagtattc |
119 |
Q |
| |
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||||||||| |||||||||||| ||| | ||| || |||||||||| |||| | || | || |||||| |||||||||| |||||||||| |||||| |
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| T |
11605925 |
tgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaaggcgaagattgtattc |
11606024 |
T |
|
| Q |
120 |
atctatagcatcttccatgtcttgagcaataactctaacccttttaacccatactttgagttcagggtctttgtcttccattgaatcagctaccatcaag |
219 |
Q |
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|||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| || |||| || | | ||| |
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| T |
11606025 |
atctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttcaggatctttgtcttccaatgcatcatctctcgttaag |
11606124 |
T |
|
| Q |
220 |
atggccttgtggcgttcgagttcgtctttgatgtattgaacatcttcacggacgcctctttgtagatttacctcttcttgaagtaaccaagttagcttct |
319 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||| | || || | |
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| T |
11606125 |
atggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagtaaccaactcagtttgt |
11606224 |
T |
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| Q |
320 |
ccaacaaaaatgatactgaactctctgccatttt |
353 |
Q |
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|||| ||||||||||||||||| ||||||||||| |
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| T |
11606225 |
ccaataaaaatgatactgaactatctgccatttt |
11606258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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