View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5296_low_7 (Length: 320)
Name: NF5296_low_7
Description: NF5296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5296_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 4123500 - 4123801
Alignment:
| Q |
1 |
tccaacataaaatcgtcttccatttcctcgccctcgtgaaaaaacaaaacatcaccaaaatcatccattgttgtcgatgttgaatttgttcttcttctat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4123500 |
tccaacataaaatcgtcttccatttcctcgccctcgtgaaaaaacaacacatcaccaaaatcatccattgttgtggatgttgaatttgttcttcttctat |
4123599 |
T |
|
| Q |
101 |
ctctattcctaggaatcaaatccatatccataacctcaccattctcaacagcattccacggcacccacaaatcagcatgcctccctaaagccctatcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123600 |
ctctattcctaggaatcaaatccatatccataacctcaccattctcaacagcattccacggcacccacaaatcagcatgcctccctaaagccctatcaac |
4123699 |
T |
|
| Q |
201 |
atccccaacaacaacagtacctaaattagcctctctagccttcctcaacatctcactaaaatcggaatcatcggaaaccaaaaacaaccaatcaatccct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123700 |
atccccaacaacaacagtacctaaattagcctctctagccttcctcaacatctcactaaaatcggaatcatcggaaaccaaaaacaaccaatcaatccct |
4123799 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
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|| |
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| T |
4123800 |
ct |
4123801 |
T |
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