View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297-Insertion-2 (Length: 958)
Name: NF5297-Insertion-2
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297-Insertion-2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 667; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 231 - 958
Target Start/End: Complemental strand, 48362672 - 48361952
Alignment:
| Q |
231 |
cacaatgccttctctaatatttatttttaagttgaaatggaaacttaacttctgttaagaagaatgggggtaacaaggaccagactctagactacatggt |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48362672 |
cacaatgccttctctaatatttatttttaagttgaaatggaaacttaacttctgttaagaagaatgggggtaaaaaggaccagactctagactacatggt |
48362573 |
T |
|
| Q |
331 |
ctaaaaagtataacttcataatatttgtataaaaggtgagagtgcagtcattcgggatacttgacagagctctaaactgaagattaagaatccttagata |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48362572 |
ctaaaaagtataacttcataatatttgtataaaaggtgagagtgcagtcattcgagatacttgacagagctctaaactgaagattaagaatccttagata |
48362473 |
T |
|
| Q |
431 |
acaagatcagaaagaaaaaaggaacataacttgtgcaaaagaaagtacatcaaatcaaagtataagagtattgtttactgaaaaacttactgtatgcaat |
530 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48362472 |
acaagatcagaaagaaaaaaggaacataa---gtgcaaaagaaagtacatcaaatcaaagtataagagtattgtttactgaaaaacttactgtatgcaat |
48362376 |
T |
|
| Q |
531 |
tgctgattgttctagaattttctagagctgcaactaactgagatttgttcagttagttacagcagttatgttacatacagttattttggaaggtacagct |
630 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48362375 |
tgctgattgttctagaattttctagagctgcaactaactgagatttgttcagttagttacagcagttatgttacatacagttattttggaaggtacagct |
48362276 |
T |
|
| Q |
631 |
agaacagttctatatgaacagcttaggtggaatcatttgtaacagattaacattaacatatctcagtctcactcatataacaaatataatatattattat |
730 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48362275 |
agaacagttctatatgaacagcttaggtggaatcatttgtaacagattaacattaacatatctcagtctcactcatataacaaatataatatattattat |
48362176 |
T |
|
| Q |
731 |
gttactgtgcacccaaagtgtagtcataaaatgtgtttttatctttatgttgttctagtatttgaaaaaatataggtatgaacaagcttaatcatgagca |
830 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48362175 |
gttactgtgcacccaaagtgtagtcataaaatgtgtttttatctttatgttgttctagtatttgaaaaaatataggtatgaacaagcttaatcatgagca |
48362076 |
T |
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| Q |
831 |
tggatatgagtaattagtaaaaagattgtgttttgtccacctcaactatcctttgtttttcatggtatctctccctaaataacaacttattttcaaaaca |
930 |
Q |
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| T |
48362075 |
tggatatgagtaattggtaaaaagattgtgttttgtccaccttaactatcctttg-ttttcatggtatctctccctaaataacaact--atttcaaaaca |
48361979 |
T |
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| Q |
931 |
tgggtattacatagatatcaatatttgg |
958 |
Q |
| |
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| |||||||||||||||||||||||||| |
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| T |
48361978 |
t-ggtattacatagatatcaatatttgg |
48361952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 48362897 - 48362742
Alignment:
| Q |
8 |
taacctaccttgtgctgaaatttaaggtccacttactttctaacaacattttcaattttcactttataggtgggtggctggaatgatggatatggacttt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48362897 |
taacctaccttgtgctgaaatttaaggtccacttactttctaacaacattttcaattttcactttataggtgggtggctggaatgatggatatggacttt |
48362798 |
T |
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| Q |
108 |
cctctttaattgtgata--gagaagatggaagctaactagagagaatgcatttctg |
161 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48362797 |
cctctttaattgtgatagagagaagatggaagctaactagagagaatgcatttctg |
48362742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 29783823 - 29783861
Alignment:
| Q |
122 |
atagagaagatggaagctaactagagagaatgcatttct |
160 |
Q |
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||||||||||| | ||||||||||||||||||||||||| |
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| T |
29783823 |
atagagaagatagtagctaactagagagaatgcatttct |
29783861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 29787830 - 29787868
Alignment:
| Q |
122 |
atagagaagatggaagctaactagagagaatgcatttct |
160 |
Q |
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||||||||||| | ||||||||||||||||||||||||| |
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| T |
29787830 |
atagagaagatagtagctaactagagagaatgcatttct |
29787868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 1661705 - 1661822
Alignment:
| Q |
46 |
tctaacaacattttcaattttcactttataggtgggtggctggaatga-----tggatatggactttcctctttaattgtgatagagaagatggaagcta |
140 |
Q |
| |
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|||||||||||||||||| || ||||| || ||||||||||||||| | ||| |||||| || | | | ||| |||||| ||||| |||||||||| |
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| T |
1661705 |
tctaacaacattttcaatatttactttgtatgtgggtggctggaataaacatttggttatgga-ttccatttctaactgtgatggagaaaatggaagcta |
1661803 |
T |
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| Q |
141 |
actagagagaatgcatttc |
159 |
Q |
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||||||||||||||||||| |
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| T |
1661804 |
actagagagaatgcatttc |
1661822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 4626389 - 4626342
Alignment:
| Q |
112 |
tttaattgtgatagagaagatggaagctaactagagagaatgcatttc |
159 |
Q |
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||||||| |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
4626389 |
tttaattatgatagagaaaatggaagctaactagagagcatgcatttc |
4626342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 8689315 - 8689262
Alignment:
| Q |
105 |
tttcctctttaattgtgatagagaagatggaagctaactagagagaatgcattt |
158 |
Q |
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|||||| || |||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
8689315 |
tttccttttcaattatgatagagaatatgaaagctaactagagagaatgcattt |
8689262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 44643226 - 44643361
Alignment:
| Q |
34 |
gtccacttactttctaacaacattttcaattttcactttataggtgggtggctggaatg---------atggatatggactttcctctttaattgtgata |
124 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||| || | | |||||||||||| |||||| | || ||||| ||||||||||||| |
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| T |
44643226 |
gtccatttactttctaacaacattttcaatttttactttgtatgcgagtggctggaatgacatgtgatatggattttgattttcccttttaattgtgata |
44643325 |
T |
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| Q |
125 |
gaga--agatggaagctaactagagagaatgcattt |
158 |
Q |
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|||| |||| ||||||| ||||||||| ||||||| |
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| T |
44643326 |
gagaagagatagaagctacctagagagagtgcattt |
44643361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 24094130 - 24094198
Alignment:
| Q |
93 |
atggatatggactttcctctttaattgtgatagaga--agatggaagctaactagagagaatgcatttc |
159 |
Q |
| |
|
|||| |||||| |||||| ||||||| |||| |||| |||||||||||||| |||||||||||||||| |
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| T |
24094130 |
atggctatggattttcctttttaattttgatggagagcagatggaagctaacgagagagaatgcatttc |
24094198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 39153982 - 39153939
Alignment:
| Q |
41 |
tactttctaacaacattttcaattttcactttataggtgggtgg |
84 |
Q |
| |
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||||||||||||| |||||||||||| |||||||| |||||||| |
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| T |
39153982 |
tactttctaacaatattttcaatttttactttatatgtgggtgg |
39153939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 35509189 - 35509147
Alignment:
| Q |
42 |
actttctaacaacattttcaattttcactttataggtgggtgg |
84 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
35509189 |
actttctaacaacattttcaatttttactctatatgtgggtgg |
35509147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 43547446 - 43547509
Alignment:
| Q |
98 |
tatggactttcctctttaattgtgatagagaagatggaagctaactagagagaatgcatttctg |
161 |
Q |
| |
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|||||| |||| | |||||||||||||||||| ||| |||||||||| || |||||||||||| |
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| T |
43547446 |
tatggattttcttttttaattgtgatagagaatatgtaagctaactaacgaaaatgcatttctg |
43547509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 22814111 - 22814160
Alignment:
| Q |
40 |
ttactttctaacaacattttcaattttcactttataggtgggtggctgga |
89 |
Q |
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||||||||||||||||||||||||||| ||||| || || ||| |||||| |
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| T |
22814111 |
ttactttctaacaacattttcaattttaactttttatgtaggtcgctgga |
22814160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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