View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_high_14 (Length: 247)
Name: NF5297_high_14
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_high_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 2069495 - 2069268
Alignment:
| Q |
18 |
atctccttccaatgataattgtgtggagaaaatgtcgtgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacatat |
117 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2069495 |
atctccttccaatgataattgtgtggagaa--tgtcatgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacattt |
2069398 |
T |
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| Q |
118 |
tggttggtaatacatcagttcctccgcattgtgtggcgcctatacaaagagacattgatgttattagcgcagacaaggtctcaggcgccctctttgttct |
217 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2069397 |
tggttggtaatacatcaattcctctgcattgtgtggcgcctatacaaagagacattgatgttattagcgcagacaaggtctcaggcgccctccttgttct |
2069298 |
T |
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| Q |
218 |
actattcttcaaagagataatgatttaatt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2069297 |
actattcttcaaagagataatgatttaatt |
2069268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 2073841 - 2073614
Alignment:
| Q |
18 |
atctccttccaatgataattgtgtggagaaaatgtcgtgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacatat |
117 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2073841 |
atctccttccaatgataattgtgtggagaa--tgttgtgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacattt |
2073744 |
T |
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| Q |
118 |
tggttggtaatacatcagttcctccgcattgtgtggcgcctatacaaagagacattgatgttattagcgcagacaaggtctcaggcgccctctttgttct |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
2073743 |
tggttggtaatacatcaattcctccgcattgtgtggcgcctatacaaagagacattcatgttattagcgcggacaaggtctcaggcgccctccttgttct |
2073644 |
T |
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| Q |
218 |
actattcttcaaagagataatgatttaatt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2073643 |
actattcttcaaagagataatgatttaatt |
2073614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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