View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5297_high_15 (Length: 245)
Name: NF5297_high_15
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_high_15 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 31269791 - 31270018
Alignment:
| Q |
18 |
gaattgatatcaaaacaataccaaaagttttgtgtgtactccactttattattaaatgagttgggaaagaaaattaaaagttgtataattgtacgttatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31269791 |
gaattgatatcaaaacaataccaaaagttttgtgtgtactccactttattattaaatgagttgggaaagaaaattaaaagttgtataattgtacgttatg |
31269890 |
T |
|
| Q |
118 |
aactgtattaatgggatataaaagctacaaaaaaggggaatgttttannnnnnnatgaatagtaaaaggaattttttatgaatggtaaaaggaatatgcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31269891 |
aactgtattaatgggatataaaagctacaaaaaaggggaatgttttatttttttatgaatagtaaaaggaattttttatgaatggtaaaaggaatatgcg |
31269990 |
T |
|
| Q |
218 |
ttaagttagcccgttgattaattaaata |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
31269991 |
ttaagttagcccgttgattaattaaata |
31270018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University