View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_high_17 (Length: 242)
Name: NF5297_high_17
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_high_17 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 8719363 - 8719140
Alignment:
| Q |
19 |
agtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatca |
118 |
Q |
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| T |
8719363 |
agtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatca |
8719264 |
T |
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| Q |
119 |
tataatgctctttacctaaatttacgtttagaagtacacatatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719263 |
tataatgctctttacctaaatttacgtttagaagtacacatatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaat |
8719164 |
T |
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| Q |
219 |
cttgcagtcatgcacgaaagttgc |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
8719163 |
cttgcagtcatgcacgaaagttgc |
8719140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 8673066 - 8672841
Alignment:
| Q |
19 |
agtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatca |
118 |
Q |
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|||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8673066 |
agtaccttggacttttgagcagaagcttggtgaagcactatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgaaacatctcttatca |
8672967 |
T |
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| Q |
119 |
tataatgctctttacctaaatttacgtttagaagtaca--catatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaa |
216 |
Q |
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| T |
8672966 |
tataatcctctttacctaaatttaagtttaaaagtacatgtatatcttttgattatttgactgaatctatagttaataactttaatcactatattgtaaa |
8672867 |
T |
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| Q |
217 |
atcttgcagtcatgcacgaaagttgc |
242 |
Q |
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| T |
8672866 |
atcttgcagtcatgcacaaaagttgc |
8672841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 8591526 - 8591302
Alignment:
| Q |
19 |
agtacctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8591526 |
agtacctttgacttttgagcagaaacttggtgaagcagtatttatacttgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatca |
8591427 |
T |
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| Q |
119 |
tataatgctctttacctaaatttacg-tttagaagtacacatatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaa |
217 |
Q |
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|||||| ||||| || |||||||| | || | ||||||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
8591426 |
tataattctcttgacttaaatttaagcttaaaaagtacaagtaacttgtggttatttgactgaatctatagttagtaactctaatcactatattgtaaaa |
8591327 |
T |
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| Q |
218 |
tcttgcagtcatgcacgaaagttgc |
242 |
Q |
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|||||||||||||||||||| |||| |
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| T |
8591326 |
tcttgcagtcatgcacgaaaattgc |
8591302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 23439829 - 23439930
Alignment:
| Q |
23 |
cctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatata |
122 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
23439829 |
ccttggacttttgagcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgtaacatctcttatcatata |
23439928 |
T |
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| Q |
123 |
at |
124 |
Q |
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|| |
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| T |
23439929 |
at |
23439930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 5116184 - 5116101
Alignment:
| Q |
159 |
tatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgcagtcatgcacgaaagttgc |
242 |
Q |
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| T |
5116184 |
tatctagtgattatttgattgtatctatttttaataactctaaatactatattgtaaaatcttgcagtcatgcacaaaagttgc |
5116101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 55410164 - 55410078
Alignment:
| Q |
28 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctctt |
114 |
Q |
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|||||||||||| |||||||| || ||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||| ||||||| |
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| T |
55410164 |
gacttttgagcaaaaacttggggaggcagtatttattcctgctggatgcccacatcaagtcaggaatcttaaggtaaaatatctctt |
55410078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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