View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_high_21 (Length: 206)
Name: NF5297_high_21
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 8673094 - 8673262
Alignment:
| Q |
17 |
aaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaa |
116 |
Q |
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| T |
8673094 |
aaataactagtcacatgatgatttaattaatctagaaagtttgaaatgctatgtgctaaccaaactcttcatccagcttcttcttatgctcaaaagtcaa |
8673193 |
T |
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| Q |
117 |
ataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaagatgt |
185 |
Q |
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| T |
8673194 |
ataaaaacattggtcatgaataggatggacaacctaagcaacaaagaagttagtgagactcaaacatgt |
8673262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 41 - 185
Target Start/End: Original strand, 8719411 - 8719555
Alignment:
| Q |
41 |
aattaatatagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattgatcatgaatagg |
140 |
Q |
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| T |
8719411 |
aattaatctagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaatagg |
8719510 |
T |
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| Q |
141 |
atggacaacctaagcaaaaaagaagttagtgagactcaaagatgt |
185 |
Q |
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| T |
8719511 |
atgaataacctaagaaacaaagaagttagtgagactcaaacatgt |
8719555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 8591583 - 8591714
Alignment:
| Q |
49 |
tagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattgatcatgaataggatggacaa |
148 |
Q |
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| T |
8591583 |
tagaaagtttgaaatgctacgtgctaaccaaattctttctccagcttcttcttatggtcaaaagtcaaataaaaacattggtcatgaataggatgaataa |
8591682 |
T |
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| Q |
149 |
cctaagcaaaaaagaagttagtgagactcaaa |
180 |
Q |
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| T |
8591683 |
cctaagcaacaaagaagttagtgagactcaaa |
8591714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 23439797 - 23439632
Alignment:
| Q |
17 |
aaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
23439797 |
aaataactagtcacatgatgatttaattaatatagaaagtttgaaatgctatgtgctaaccaaactcttccttcagcttctt---atgctcaaaagtcaa |
23439701 |
T |
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| Q |
117 |
ataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaagatgt |
185 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23439700 |
ataaaaacattggtcatgaataggatggacaacctaagcaaaaaagaagttagtgagactcaaacatgt |
23439632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 55410251 - 55410343
Alignment:
| Q |
72 |
ctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattgatcatgaataggatggacaacctaagcaaaaaagaa |
164 |
Q |
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|||||||||||| |||| || ||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||||| ||| |||||| |
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| T |
55410251 |
ctaaccaaactcctccttcaacttattcttgtgctccaaagtcaaataaaaacattggtcatgaattggatgtacaacctaaccaacaaagaa |
55410343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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