View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_high_6 (Length: 316)
Name: NF5297_high_6
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 23439360 - 23439622
Alignment:
| Q |
20 |
aataactggttcagaaagagggtcttgttgaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaaga |
119 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439360 |
aataactggttcagaaagagggtcttgttcaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaaga |
23439459 |
T |
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| Q |
120 |
tacatcagaaacagctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcat |
219 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23439460 |
tacatcagaaacagctagtgcactttgggacatatttcgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcat |
23439559 |
T |
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| Q |
220 |
acttatttttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttata |
282 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439560 |
acttattgttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttata |
23439622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 8673534 - 8673272
Alignment:
| Q |
20 |
aataactggttcagaaagagggtcttgttgaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaaga |
119 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
8673534 |
aataactggttcaaaaagagggtcttgttcaagataatggaggtccttttaagatcaaaggaaagctatttctaaatgaagttccaccaatcacagaaga |
8673435 |
T |
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| Q |
120 |
tacatcagaaacagctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcat |
219 |
Q |
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| T |
8673434 |
tacattagaaacaactggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcat |
8673335 |
T |
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| Q |
220 |
acttatttttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttata |
282 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8673334 |
acttgttgttctccagtaaaagaggtattatattatcacatttcatcaatatttccgcttata |
8673272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 32 - 260
Target Start/End: Complemental strand, 8719815 - 8719587
Alignment:
| Q |
32 |
agaaagagggtcttgttgaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaagatacatcagaaac |
131 |
Q |
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| T |
8719815 |
agaaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaatgaagttccatcaatcacagaagatacatcagaaac |
8719716 |
T |
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| Q |
132 |
agctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcatacttatttttct |
231 |
Q |
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| T |
8719715 |
agctggtgcactttgggacatattccgaagagaagatactgcaaagttagaaacatatcttagaagacattccaaagaatttaggcatacttattgttct |
8719616 |
T |
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| Q |
232 |
ccagtaaaagaggtattatattatcacat |
260 |
Q |
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| T |
8719615 |
ccagtaaaagaggtattatactatcacat |
8719587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 109 - 281
Target Start/End: Complemental strand, 8591895 - 8591723
Alignment:
| Q |
109 |
atcacagaagatacatcagaaacagctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaag |
208 |
Q |
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|||||| |||| | ||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
8591895 |
atcacaaaagaaatatctgaaacagctggtgctctttgggacatatttaaaagagaagatactgcaaagttagaagcatatcttcaaaaacattgcaaag |
8591796 |
T |
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| Q |
209 |
aatttaggcatacttatttttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttat |
281 |
Q |
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||||||||||||||| ||| ||||| ||| || ||||||||||||||| |||||||||||||||||| ||||| |
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| T |
8591795 |
aatttaggcatacttttttctctccggtagaaaaggtattatattatcgcatttcatcaacgtttccacttat |
8591723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 55410510 - 55410429
Alignment:
| Q |
145 |
tgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcatacttatt |
226 |
Q |
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||||| |||| ||| ||||| || |||| |||||||| |||||||||| ||||| | || |||||||| ||||||||||||| |
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| T |
55410510 |
tgggatatatttcggagagaggacactgaaaagttaggagcatatcttagaaaacactcgaaagaattcaggcatacttatt |
55410429 |
T |
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