View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_high_8 (Length: 277)
Name: NF5297_high_8
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 3689275 - 3689045
Alignment:
| Q |
18 |
gtattcatgtccaaaataaataatttcatcaacttgtatcaagtgagttcaatttttgtttcaaatcaagatatgtatataacaagacgaacacnnnnnn |
117 |
Q |
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| T |
3689275 |
gtattcatgtccaaaataaataatttcatcaacttgtatctagtgagttcaatttttgtttcaaatcaagatatgtatataacaagacgaacacaaaaaa |
3689176 |
T |
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| Q |
118 |
nntgaaagctaggcacattaattatatctggccattgataattcttttttatgaaatctgatatgaagttatgaactataccatcatccttattatcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3689175 |
aatgaaagctaggcacattaattatatctggccattgataattcttttttatgaaatctgatatgaagttatgaactataccatcatccttattatcatt |
3689076 |
T |
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| Q |
218 |
ttgattacctgatctaattaaatatatatat |
248 |
Q |
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|||||||||||||| |||||||||||||||| |
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| T |
3689075 |
ttgattacctgatcaaattaaatatatatat |
3689045 |
T |
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