View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5297_high_9 (Length: 269)

Name: NF5297_high_9
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5297_high_9
NF5297_high_9
[»] chr1 (3 HSPs)
chr1 (184-269)||(2069117-2069202)
chr1 (198-269)||(2073477-2073548)
chr1 (13-103)||(2068939-2069029)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 2069117 - 2069202
Alignment:
Q  184 gaaggttgaatggtacaactcaactgcccttgtgttcccccttggagcaagtgttataggcctccttccgagcaatgattgatttt 269  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2069117 gaaggttgaatggtacaactcaaccgcccttgtgttcccccttggagcaagtgttataggcctccttcggagcaatgattgatttt 2069202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 2073477 - 2073548
Alignment:
Q  198 acaactcaactgcccttgtgttcccccttggagcaagtgttataggcctccttccgagcaatgattgatttt 269  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2073477 acaactcaaccgcccttgtgttcccccttggagcaagtgttataggcctccttcggagcaatgattgatttt 2073548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 2068939 - 2069029
Alignment:
Q  13 agcataggtggaaaatttgaagatcccaaattaagtagacacctctaaagaaccctcatcttctgtctctcacttacaagatatattatta 103  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||    
T  2068939 agcataagtggaaaatttgaagatcccaaattaggtaaacacctccaaagaaccctcatcctctctctctcacttataagatatattatta 2069029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University