View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_low_1 (Length: 541)
Name: NF5297_low_1
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Original strand, 8820218 - 8820738
Alignment:
| Q |
11 |
cagagatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttga |
110 |
Q |
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| T |
8820218 |
cagagatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttga |
8820317 |
T |
|
| Q |
111 |
agctggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaat |
210 |
Q |
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| T |
8820318 |
agctggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaat |
8820417 |
T |
|
| Q |
211 |
aaagctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacggttttttggaaagtttctcatgc |
310 |
Q |
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| T |
8820418 |
aaagctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacgattttttggaaagtttctcatgc |
8820517 |
T |
|
| Q |
311 |
aagttacaagtactgctgtgttcatccatgtgctgctgtttccacccatacacaagaatatacacatctgcaaaatagttccaaagtaataaaataaatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8820518 |
aagttacaagtactgctgtgttcatccatgtgctgctgtttccacccatacacaagaatatacacatctgcaaaatagttccaaagtaataaaataaatt |
8820617 |
T |
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| Q |
411 |
ggttttttccttcttgaaatgttgtattcatccaacaccctgtctaa-----atatactacttaattaaacatttctataacaaaagatattataaagtg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8820618 |
ggttttttccttcttgaaatgttgtattcatccaacaccctgtctaaatattatatactacttaattaaacatttctataacaaaagatattataaagtg |
8820717 |
T |
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| Q |
506 |
cttatgtatagagatatttct |
526 |
Q |
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| T |
8820718 |
cttatgtatagagatatttct |
8820738 |
T |
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