View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_low_10 (Length: 282)
Name: NF5297_low_10
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 31902365 - 31902610
Alignment:
| Q |
19 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgnnnnnnnnn |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31902365 |
cacaaagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgttttttttt |
31902464 |
T |
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| Q |
119 |
naatagcaaaaaccactttattgttagttaaagtacatagtcataagttaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgctnn |
218 |
Q |
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| T |
31902465 |
ta-tagcaaaaaccactttattgttagttaaagtacatagtcataaattaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgctaa |
31902563 |
T |
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| Q |
219 |
nnnnnnnttactaaatgatatttcattcatttaatttgatagaatat |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31902564 |
aaaaaaattactaaatgatatttcattcatttaatttgatagaatat |
31902610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 31680674 - 31680479
Alignment:
| Q |
19 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgnnnnnnnnn |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31680674 |
cacaaagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgttttttttt |
31680575 |
T |
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| Q |
119 |
naatagcaaaaaccactttattgttagttaaagtacatagtcataagttaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgct |
216 |
Q |
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| T |
31680574 |
--atagcaaaaaccactttattgttagttaaagtacatagtcataaattaaattgtttcgattgtccttaggactactcatcaaaaaaactgatcgct |
31680479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 31918021 - 31918219
Alignment:
| Q |
19 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattg-nnnnnnnn |
117 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31918021 |
cacaaagcaaaagaaacgaccaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgttttttttt |
31918120 |
T |
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| Q |
118 |
nnaatagcaaaaaccactttattgttagttaaagtacatagtcataagttaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgct |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
31918121 |
ttaatagcaaaagccactttattgttagttaaagtacatagtcataaattaaattgtttcgattgtccttaggactactcgtcaaaataactgatcgct |
31918219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 52957262 - 52957206
Alignment:
| Q |
19 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaa |
75 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
52957262 |
cacaaagcaaaagaaacgacaaataagaaaagaagcatggtaaaatactaaaaaaaa |
52957206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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