View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5297_low_15 (Length: 258)

Name: NF5297_low_15
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5297_low_15
NF5297_low_15
[»] chr6 (21 HSPs)
chr6 (1-256)||(31284503-31284758)
chr6 (11-218)||(26623232-26623458)
chr6 (11-218)||(26729210-26729436)
chr6 (49-125)||(26623636-26623712)
chr6 (49-125)||(26729613-26729689)
chr6 (148-243)||(27214648-27214743)
chr6 (148-243)||(27234485-27234580)
chr6 (142-204)||(28234830-28234892)
chr6 (143-204)||(28181381-28181442)
chr6 (143-204)||(28227217-28227278)
chr6 (142-204)||(26937373-26937435)
chr6 (142-204)||(28185633-28185695)
chr6 (142-204)||(28297571-28297633)
chr6 (142-204)||(28325744-28325806)
chr6 (142-204)||(28514440-28514502)
chr6 (152-188)||(25580002-25580038)
chr6 (152-188)||(26056209-26056245)
chr6 (152-188)||(26076179-26076215)
chr6 (142-242)||(27337923-27338023)
chr6 (142-242)||(27398663-27398763)
chr6 (142-194)||(28098215-28098267)
[»] scaffold0038 (3 HSPs)
scaffold0038 (142-204)||(34992-35054)
scaffold0038 (143-204)||(27715-27776)
scaffold0038 (142-204)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (99-188)||(28127481-28127570)
[»] chr2 (1 HSPs)
chr2 (142-198)||(3279976-3280032)
[»] chr4 (1 HSPs)
chr4 (142-211)||(5090806-5090875)
[»] scaffold0019 (1 HSPs)
scaffold0019 (142-198)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 31284758 - 31284503
Alignment:
Q  1 tttgacatacaataactagtatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaag 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284758 tttgacatacaataactaatatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaag 31284659  T
Q  101 gcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaaccttt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284658 gcaaaacaagattgaagtgaagaaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaaccttt 31284559  T
Q  201 ccatatgatctgtattatgttggaacctctcttcatgcttagcctatgctactcca 256  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  31284558 ccatatgatctgtattatgttggaacctctcttcatgcttagccaatgcttctcca 31284503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 26623458 - 26623232
Alignment:
Q  11 aataactagtatttgtttaaatatataaataaaaaat---gtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaa-------- 99  Q
    |||| ||| |||||||||||||||||||| |||||||   |||||||||||||||||| |||||||||||||| ||||||| ||||||||||            
T  26623458 aatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagca 26623359  T
Q  100 --------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccattttt 191  Q
            |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  26623358 tatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccattttt 26623259  T
Q  192 gcaacctttccatatgatctgtattat 218  Q
    ||||||| ||||||| || ||||||||    
T  26623258 gcaacctctccatattatatgtattat 26623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 26729436 - 26729210
Alignment:
Q  11 aataactagtatttgtttaaatatataaataaaaaat---gtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaa-------- 99  Q
    |||| ||| |||||||||||||||||||| |||||||   |||||||||||||||||| |||||||||||||| ||||||| ||||||||||            
T  26729436 aatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagca 26729337  T
Q  100 --------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccattttt 191  Q
            |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  26729336 tatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccattttt 26729237  T
Q  192 gcaacctttccatatgatctgtattat 218  Q
    ||||||| ||||||| || ||||||||    
T  26729236 gcaacctctccatattatatgtattat 26729210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  49 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 125  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  49 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 125  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 27214743 - 27214648
Alignment:
Q  148 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 243  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27214648  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 27234485 - 27234580
Alignment:
Q  148 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 243  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27234580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 28234892 - 28234830
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  28234892 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 28234830  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 28181442 - 28181381
Alignment:
Q  143 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28181442 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 28181381  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 28227278 - 28227217
Alignment:
Q  143 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28227278 tggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccat 28227217  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 26937435 - 26937373
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| |||||||||||| || |||||  |||||||||||||||||||  ||||||| |||||    
T  26937435 atggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 28185695 - 28185633
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28185695 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 28297571 - 28297633
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28297571 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 28325806 - 28325744
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28325806 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 28325744  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 28514502 - 28514440
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28514502 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28514440  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 25580038 - 25580002
Alignment:
Q  152 gacaagttagctgcttgagtaagagctatcttccatt 188  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  25580038 gacaagttagcagcttgggtaagagctatcttccatt 25580002  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 26056245 - 26056209
Alignment:
Q  152 gacaagttagctgcttgagtaagagctatcttccatt 188  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26056245 gacaagttagcagcttgagtaagagccatcttccatt 26056209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 26076215 - 26076179
Alignment:
Q  152 gacaagttagctgcttgagtaagagctatcttccatt 188  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26076215 gacaagttagcagcttgagtaagagccatcttccatt 26076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 27337923 - 27338023
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 241  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27338022  T
Q  242 g 242  Q
    |    
T  27338023 g 27338023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 27398663 - 27398763
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 241  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27398762  T
Q  242 g 242  Q
    |    
T  27398763 g 27398763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 28098215 - 28098267
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgca 194  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  28098215 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 35054 - 34992
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  35054 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 34992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 27776 - 27715
Alignment:
Q  143 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  27776 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 27715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 117121 - 117059
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 204  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  117121 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 117059  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 28127481 - 28127570
Alignment:
Q  99 aggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatt 188  Q
    ||||||||||||||| ||||  |||||| ||||| |||  |  ||||| ||| ||||||||||| ||||| || ||||||||||||||||    
T  28127481 aggcaaaacaagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccatt 28127570  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 3280032 - 3279976
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 198  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  3280032 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 3279976  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 5090806 - 5090875
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 211  Q
    ||||| ||||||||| |||||||||||  ||||||| |||| |||||| |||||| | ||||||| ||||    
T  5090806 atggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatattatct 5090875  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 58140 - 58196
Alignment:
Q  142 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 198  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| ||||||||    
T  58140 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacct 58196  T

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