View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5297_low_20 (Length: 245)

Name: NF5297_low_20
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5297_low_20
NF5297_low_20
[»] chr6 (23 HSPs)
chr6 (1-228)||(31284975-31285202)
chr6 (1-228)||(26623689-26623914)
chr6 (1-228)||(26729666-26729891)
chr6 (85-228)||(26802946-26803089)
chr6 (152-228)||(28786805-28786881)
chr6 (152-211)||(27718055-27718114)
chr6 (153-219)||(27610668-27610734)
chr6 (160-228)||(28792934-28793002)
chr6 (152-219)||(28781668-28781735)
chr6 (152-214)||(27427165-27427227)
chr6 (134-214)||(27592574-27592654)
chr6 (134-214)||(27677173-27677253)
chr6 (134-214)||(27679499-27679579)
chr6 (160-228)||(27698125-27698193)
chr6 (134-214)||(27705957-27706037)
chr6 (134-221)||(26647028-26647115)
chr6 (134-221)||(26752996-26753083)
chr6 (134-228)||(27530840-27530934)
chr6 (134-228)||(27604243-27604337)
chr6 (152-221)||(26656532-26656601)
chr6 (152-221)||(26762503-26762572)
chr6 (161-221)||(28297286-28297346)
chr6 (161-221)||(28514727-28514787)
[»] chr1 (1 HSPs)
chr1 (152-228)||(267879-267955)
[»] scaffold0349 (1 HSPs)
scaffold0349 (152-211)||(3095-3154)
[»] scaffold0419 (1 HSPs)
scaffold0419 (152-228)||(8054-8130)
[»] scaffold0277 (2 HSPs)
scaffold0277 (152-228)||(13214-13290)
scaffold0277 (160-214)||(4265-4319)
[»] chr8 (1 HSPs)
chr8 (152-228)||(29273377-29273453)
[»] chr4 (5 HSPs)
chr4 (152-228)||(18698935-18699011)
chr4 (152-214)||(18074328-18074390)
chr4 (152-214)||(18679109-18679171)
chr4 (152-228)||(18655012-18655088)
chr4 (152-228)||(18731039-18731115)
[»] scaffold0003 (1 HSPs)
scaffold0003 (152-214)||(60136-60198)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31284975 - 31285202
Alignment:
Q  1 caatcttaaagcttaaatgggaaccacaatttatatattcttaaactagaattagttttttataactcaaaacaatgaaaattttataatataattatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284975 caatcttaaagcttaaatgggaaccacaatttatatattcttaaactagaattagttttttataactcaaaacaatgaaaattttataatataattatca 31285074  T
Q  101 atacatgaatgtgattgtcatgttgttgtttggactaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31285075 atacatgaatgtgattgtcatgttgttgtttggactaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacat 31285174  T
Q  201 ctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||||||||||||||||||||||||    
T  31285175 ctccaacaagatcaatcgtgtgccctta 31285202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26623689 - 26623914
Alignment:
Q  1 caatcttaaagcttaaatgggaaccacaatttatatattcttaaactagaattagtttttt-ataactcaaaacaatgaaaattttataatataattatc 99  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||  |||| ||||||| |||||||||||||     
T  26623689 caatcttaaagcttaaatgggaaaaacaatttatatattcttaaactaaaattagtttttttataactcaa--caattaaaattt-ataatataattatt 26623785  T
Q  100 aatacatgaatgtgattgtcatgttgttgtttggactaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaataca 199  Q
    ||||||||||||| |||||||||||| |||||  |||||||||||||| || |||||||||||||||||||||||||||||| | | |||||||||||||    
T  26623786 aatacatgaatgttattgtcatgttgatgtttctactaacatatctagctggacatgaacagatatgaatatgattttattgaaaagatagtcaaataca 26623885  T
Q  200 tctccaacaagatcaatcgtgtgccctta 228  Q
    |||||||||||||||||||||||||||||    
T  26623886 tctccaacaagatcaatcgtgtgccctta 26623914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26729666 - 26729891
Alignment:
Q  1 caatcttaaagcttaaatgggaaccacaatttatatattcttaaactagaattagtttttt-ataactcaaaacaatgaaaattttataatataattatc 99  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||  |||| ||||||| |||||||||||||     
T  26729666 caatcttaaagcttaaatgggaaaaacaatttatatattcttaaactaaaattagtttttttataactcaa--caattaaaattt-ataatataattatt 26729762  T
Q  100 aatacatgaatgtgattgtcatgttgttgtttggactaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaataca 199  Q
    ||||||||||||| |||||||||||| |||||  |||||||||||||| || |||||||||||||||||||||||||||||| | | |||||||||||||    
T  26729763 aatacatgaatgttattgtcatgttgatgtttctactaacatatctagctggacatgaacagatatgaatatgattttattgaaaagatagtcaaataca 26729862  T
Q  200 tctccaacaagatcaatcgtgtgccctta 228  Q
    |||||||||||||||||||||||||||||    
T  26729863 tctccaacaagatcaatcgtgtgccctta 26729891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 26802946 - 26803089
Alignment:
Q  85 tataatataattatcaatacatgaatgtgattgtcatgttgtt-gtttggactaacatatctagttgaacatgaacagatatgaatatgattttattgga 183  Q
    ||||||||| |||| | |||||| |||||||||| |||||||| ||    |||||| ||||| |||| ||||||| |||||||||||  | || ||||||    
T  26802946 tataatata-ttatgagtacatggatgtgattgtgatgttgttagtacatactaacttatcttgttggacatgaatagatatgaatacaagttgattgga 26803044  T
Q  184 gacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    || |||||||||||||||||||||||||||||||||  |||||||    
T  26803045 gagatagtcaaatacatctccaacaagatcaatcgtcagccctta 26803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 28786805 - 28786881
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | ||||||||||| |||||||||||||||||||||||||||| ||||  |||||||    
T  28786805 acatgaatagatatgaatacaagtttattggagatatagtcaaatacatctccaacaagatcagtcgtcagccctta 28786881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 27718114 - 27718055
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaaga 211  Q
    ||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  27718114 acatgaatagatatgaatacgagtttattggagagatagtcaaatacatctccaacaaga 27718055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 27610734 - 27610668
Alignment:
Q  153 catgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgt 219  Q
    |||||| ||||||||||| || |||| |||||| |||||||||||||||||||||||||||| ||||    
T  27610734 catgaatagatatgaatacgagtttactggagagatagtcaaatacatctccaacaagatcagtcgt 27610668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 28792934 - 28793002
Alignment:
Q  160 agatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    |||||||||||  | ||||||||||| |||||||||||||||||||||||||||| ||||  |||||||    
T  28792934 agatatgaatacaagtttattggagatatagtcaaatacatctccaacaagatcagtcgtcagccctta 28793002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 28781668 - 28781735
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgt 219  Q
    ||||||| |||||||||||  | |||||||| || |||||||||||||||||||||||||||| ||||    
T  28781668 acatgaatagatatgaatacaagtttattggcgatatagtcaaatacatctccaacaagatcagtcgt 28781735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 27427227 - 27427165
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    ||||||| ||||||||||| ||  |||||||| | ||||||||||||||||||||||||||||    
T  27427227 acatgaatagatatgaatacgagcttattggaaagatagtcaaatacatctccaacaagatca 27427165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 27592654 - 27592574
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    |||||| |||||  ||| ||||||| |||||||||||  |  |||||||| | ||||||||||||||||||||||||||||    
T  27592654 actaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtcaaatacatctccaacaagatca 27592574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 27677253 - 27677173
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    |||||| |||||  ||| ||||||| |||||||||||  |  |||||||| | ||||||||||||||||||||||||||||    
T  27677253 actaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtcaaatacatctccaacaagatca 27677173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 27679499 - 27679579
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    |||||| |||||  ||| ||||||| |||||||||||  |  |||||||| | ||||||||||||||||||||||||||||    
T  27679499 actaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtcaaatacatctccaacaagatca 27679579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 27698193 - 27698125
Alignment:
Q  160 agatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    |||||||||||  | ||||||| ||| |||||||||||||||||||||||||||| ||||  |||||||    
T  27698193 agatatgaatacaagtttattgaagagatagtcaaatacatctccaacaagatcagtcgtcagccctta 27698125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 27706037 - 27705957
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    |||||| |||||  ||| ||||||| |||||||||||  |  |||||||| | ||||||||||||||||||||||||||||    
T  27706037 actaacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatagtcaaatacatctccaacaagatca 27705957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 26647028 - 26647115
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgt 221  Q
    |||||| ||||| || | ||||||| |||||||||||  | ||||||||  | |||||| || |||||||||||||||||||||||||    
T  26647028 actaacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgt 26647115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 26752996 - 26753083
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgt 221  Q
    |||||| ||||| || | ||||||| |||||||||||  | ||||||||  | |||||| || |||||||||||||||||||||||||    
T  26752996 actaacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgt 26753083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 27530934 - 27530840
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    |||||| |||||  ||| ||||||| ||||||||||| || ||||||||| | |||||| || |||| ||||||| ||| | ||||| |||||||    
T  27530934 actaacttatcttattggacatgaatagatatgaatacgagtttattggaaagatagtcgaagacatttccaacaggattagtcgtgagccctta 27530840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 27604337 - 27604243
Alignment:
Q  134 actaacatatctagttgaacatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    |||||| |||||  ||| ||||||| ||||||||||| ||  |||||||| | ||||| ||| | |||||||||||||||| ||||  |||||||    
T  27604337 actaacttatcttattggacatgaatagatatgaatacgagcttattggaaagatagtgaaagaaatctccaacaagatcagtcgtcagccctta 27604243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 26656532 - 26656601
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgt 221  Q
    ||||||| |||||||||||  | |||||||   | ||||||||| |||||||| ||||||||||||||||    
T  26656532 acatgaatagatatgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgt 26656601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 26762503 - 26762572
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgt 221  Q
    ||||||| |||||||||||  | |||||||   | ||||||||| |||||||| ||||||||||||||||    
T  26762503 acatgaatagatatgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgt 26762572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 28297346 - 28297286
Alignment:
Q  161 gatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgt 221  Q
    ||||||||||||| |||||||   | |||||||||||| | |||| |||||||||||||||    
T  28297346 gatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgt 28297286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 28514727 - 28514787
Alignment:
Q  161 gatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgt 221  Q
    ||||||||||||| |||||||   | |||||||||||| | |||| |||||||||||||||    
T  28514727 gatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgt 28514787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 267955 - 267879
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  267955 acatgaatagatatgaatacaagtttattggagagatagtcaaatacatctccaacaagatcagtcgtgagccctta 267879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 3154 - 3095
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaaga 211  Q
    ||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  3154 acatgaatagatatgaatacgagtttattggagagatagtcaaatacatctccaacaaga 3095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 8054 - 8130
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | |||||||| || |||||||||||||||||||||||||||| ||||  |||||||    
T  8054 acatgaatagatatgaatacaagtttattggcgatatagtcaaatacatctccaacaagatcagtcgtcagccctta 8130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 13290 - 13214
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | |||||||| || |||||||||||||||||||||||||||| ||||  |||||||    
T  13290 acatgaatagatatgaatacaagtttattggcgatatagtcaaatacatctccaacaagatcagtcgtcagccctta 13214  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 4319 - 4265
Alignment:
Q  160 agatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    |||||||||||  | ||||||||||| ||||||||  ||||||||||||||||||    
T  4319 agatatgaatacaagtttattggagagatagtcaagaacatctccaacaagatca 4265  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 29273453 - 29273377
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | ||||| ||||| ||||||||||||||||||||||||||||  || |||||||||    
T  29273453 acatgaatagatatgaatacaagtttatcggagagatagtcaaatacatctccaacaagatcagccgcgtgccctta 29273377  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 18699011 - 18698935
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | ||||||||||| |||||||||||| ||||||||||||||| ||||  |||||||    
T  18699011 acatgaatagatatgaatacaagtttattggagatatagtcaaatacgtctccaacaagatcagtcgtcagccctta 18698935  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 18074328 - 18074390
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    ||||||| ||||||||||| ||  |||||||| | ||||||||||||||||||||||||||||    
T  18074328 acatgaatagatatgaatacgagcttattggaaagatagtcaaatacatctccaacaagatca 18074390  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 18679171 - 18679109
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    ||||||| |||||||||||  | ||||||||||| |||||||||||| |||| ||||||||||    
T  18679171 acatgaatagatatgaatacaagtttattggagagatagtcaaatacgtctctaacaagatca 18679109  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 18655088 - 18655012
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | ||||||||| | |||||||||||  ||||||||||||||| ||||  |||||||    
T  18655088 acatgaatagatatgaatacaagtttattggaaagatagtcaaatatgtctccaacaagatcagtcgtcagccctta 18655012  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 18731115 - 18731039
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgccctta 228  Q
    ||||||| |||||||||||  | ||||||| | | |||||||||||  ||||||||||||||| ||||  |||||||    
T  18731115 acatgaatagatatgaatacaagtttattgaaaagatagtcaaatatgtctccaacaagatcagtcgtcagccctta 18731039  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 60136 - 60198
Alignment:
Q  152 acatgaacagatatgaatatgattttattggagacatagtcaaatacatctccaacaagatca 214  Q
    ||||||| ||||||||||| ||  |||||||| | ||||||||||||||||||||||||||||    
T  60136 acatgaatagatatgaatacgagcttattggaaagatagtcaaatacatctccaacaagatca 60198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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