View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_low_23 (Length: 238)
Name: NF5297_low_23
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 42161557 - 42161761
Alignment:
| Q |
19 |
acaacctccacgtaaggttgcttcctttcacacacttgaagagttagatgcaaagtcaagcccaaagaagaaaaacgagtcccagtcaccaaaaccacca |
118 |
Q |
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| T |
42161557 |
acaacctccacgtaaggttgcttcctttcacacacttgaagagttagatgcaaagtcaagcccaaagaagaaaaacgagtcccagtcaccaaaaccacca |
42161656 |
T |
|
| Q |
119 |
caaccacaagctgaaccaacgaagaacaacgttgttgatgttggttcagtgagaacattaaaaccatctttgtcatcatcaaaactgaaggataacatat |
218 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42161657 |
caaccacaagctcaaccaacgaagaacaaagttgttgatgttggttcagtgagaacattaaaaccatctttgtcatcatcaaaactgaaggataacatat |
42161756 |
T |
|
| Q |
219 |
tcata |
223 |
Q |
| |
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||||| |
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| T |
42161757 |
tcata |
42161761 |
T |
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