View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5297_low_24 (Length: 238)
Name: NF5297_low_24
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38987089 - 38986867
Alignment:
| Q |
1 |
tgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacctaatttctttgcaattgcagcaattgccgaa-ctcact |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38987089 |
tgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacctaatttctttgcaattgcagcaattgccgaaactcact |
38986990 |
T |
|
| Q |
100 |
ttttattctatctatgtatttatttatggtttagggccaaaattttcggttctaattgcgggtttggcccatcatactctttatttattttttgagattt |
199 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38986989 |
ttttattctatctatttatttatttatggtttagggccaaaattctcagttctaatcgcgggtttggcccatcttactctttatttattttttgagattt |
38986890 |
T |
|
| Q |
200 |
acttttccactcctatgtctttc |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38986889 |
acttttccactcctatgtctttc |
38986867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39725811 - 39725745
Alignment:
| Q |
1 |
tgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacctaatt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39725811 |
tgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacctaatt |
39725745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 39879211 - 39879125
Alignment:
| Q |
1 |
tgttgttgacgaactttcacaaca---gaacgccacc---cttgctccatcttctccactttttgacctaatttctttgcaattgca |
81 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39879211 |
tgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatcttctccactctttgacctaatttctttgcaattgca |
39879125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40411916 - 40411830
Alignment:
| Q |
1 |
tgttgttgacgaactttcacaaca---gaacgccacc---cttgctccatcttctccactttttgacctaatttctttgcaattgca |
81 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40411916 |
tgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatcttctccactctttgacctaatttctttgcaattgca |
40411830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1164396 - 1164476
Alignment:
| Q |
1 |
tgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacctaatttctttgcaattgca |
81 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||| |||||||||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
1164396 |
tgttgttgacgaacattcacaacagcacgccatccttcctccatcttcgacactttctgacctaatttttttccaattgca |
1164476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 39874097 - 39874044
Alignment:
| Q |
117 |
atttatttatggtttagggccaaaattttcggttctaattgcgggtttggccca |
170 |
Q |
| |
|
|||||||| | ||||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
39874097 |
atttatttgttgtttagggccagaattttcagttctaatcgcgggtttggccca |
39874044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25912991 - 25913058
Alignment:
| Q |
1 |
tgttgttgacga--actttcacaacagaacgccacccttgctccatcttctccactttttgacctaat |
66 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
25912991 |
tgttgttgacgagaacattcacaacagagcgccacccttcctccatcttcttcattttttgacctaat |
25913058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 55345733 - 55345777
Alignment:
| Q |
27 |
acgccacccttgctccatcttctccactttttgacctaatttctt |
71 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
55345733 |
acgccacccttcctccatattctccactctttgacctaatttctt |
55345777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University