View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5297_low_3 (Length: 472)
Name: NF5297_low_3
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 26 - 452
Target Start/End: Complemental strand, 13019932 - 13019506
Alignment:
| Q |
26 |
atcttgaatcggtaatctctgtctcaacactctcactaccttcactatctcatcctccttctccatctccaccatctcatcaaatccatactccggtgcc |
125 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13019932 |
atcttgaatcggtaatctctgtctcaatactctcactaccttcactatctcatcctccttctccatctccaccatctcatcaaatccatactccggtgcc |
13019833 |
T |
|
| Q |
126 |
aacggaatatcaccagaaaattttccattcgcaatttcgatcagtttcttctccaattcaccgccttcgttcttcctcatcgtgtttaattccactaatc |
225 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13019832 |
accggaatatcaccggaatattttccattcgcaatttcgatcagtttcttctccaattcaccgccttcgttcttcctcatcgcgtttaattccactaatc |
13019733 |
T |
|
| Q |
226 |
caccgattagcttgtcgttgaagaaaatcattggaacagttgaatttgaatttccagttctttccttcagctctttttctctctctgtatatacatcaat |
325 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13019732 |
ctccgattagcttgtcgttgaagaaaatcattggaacagttgaatttgaatttccagttctttccttcagctctttttctctctctgtatacacatcaat |
13019633 |
T |
|
| Q |
326 |
gttgatttcgatgaatttcaatcttctttctttgaaaaatcttcgaactgcagaacagtctctgcagttcgattttgaaaacattgtaatttgtactttt |
425 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13019632 |
gttgatttcgatgaatttcaatcgtctttctttgaaaaatcttcgaactgcagaacagtctctgcagttcgattttgaaaacattgttatttgtactttt |
13019533 |
T |
|
| Q |
426 |
cccaacgtaagtctgtcgttgggaaaa |
452 |
Q |
| |
|
||||||| | ||||||||||| |||| |
|
|
| T |
13019532 |
cccaacgacactctgtcgttggaaaaa |
13019506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University