View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_low_5 (Length: 417)
Name: NF5297_low_5
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 51008359 - 51007967
Alignment:
| Q |
22 |
taaataataattttgatttaattgattaatgtgttag--------gaaagaaaggaggcagaaaaatgaagatattataagattagttggtgatgatggg |
113 |
Q |
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| T |
51008359 |
taaataataattttgatttatttaattaatgtgttagtttgttaggaaagaaaggaggcagaaaaatgaagatattataagattagttggtgatgatggg |
51008260 |
T |
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| Q |
114 |
aggagcatattgcatgactccaagattgcgtacaaaaccctaactaccttgccaaagttattcatttcgttttggttaataatatctctataacttcaac |
213 |
Q |
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| T |
51008259 |
aggagcatattgcatgactccaagattgcgtacaaaaccctaactaccttgccaaagttattcatttcgttttggttaataatatctctataacttcaac |
51008160 |
T |
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| Q |
214 |
tactccaatgctttaatatatatttaaccaataatagaaactgcatacacgtatataaaaattcaatatgttaattttttgtgttaaagtaaaaggtaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51008159 |
tactccaatgctttaatatatatttaaccaataatagaaactgcatacacgtatataacaattcaatatgttaattttttgtgttaaagtaaaaggtaat |
51008060 |
T |
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| Q |
314 |
ggtaatatactacacttggatga----------nnnnnnnnnaatgatctttagtataattactcatgtggagccttgtcattaattatcgtcatatg |
401 |
Q |
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| T |
51008059 |
gg-----tactacacttggttgaacacaatgattttttttttaatgatctttagtataattactcatgtggagccttgtcattaattatcgtcatatg |
51007967 |
T |
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