View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5297_low_7 (Length: 346)
Name: NF5297_low_7
Description: NF5297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5297_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 38522620 - 38522293
Alignment:
| Q |
1 |
tacttttatagtaaaatatgaagaaaaaataatgaagcaattttacaatcgtctccgcccgtcagcaaaatggaatatttcgtggcggggcacaatcatt |
100 |
Q |
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| T |
38522620 |
tacttttatagtaaaatatgaagaaaaaataatgaagcaattttacaatcgtctccacccgtcagcaaaatggaatatttcgtggcggggcacaatcatt |
38522521 |
T |
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| Q |
101 |
atcatcaccgtttattttcacatgcatgtcttaaaa-tgtcaacgtcgatcaaaattagaaaccacaataacaacatgcaaattaataagaaagtgagtg |
199 |
Q |
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| T |
38522520 |
atcatcaccatttattttcacatgcatgtcttaaaaatgtcaacgtcgatcaaaattagaaaccacaataacaacatgcaaattaataagaaagtgagtg |
38522421 |
T |
|
| Q |
200 |
agttgaatcctttctttttctgttgctacggtaaatagagagattcccaaaagagaaacctttgaattgtgtcatccacgacaataaagtgatgtcaacc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38522420 |
agttgaatcctttctttttctgttgctacggtaaatagaaagattcccaaaagagaaacctttgaattgtgtcatctacgacaataaagtgatgtcaacc |
38522321 |
T |
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| Q |
300 |
tcgcagagctagcttgcaacaaaagtaa |
327 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38522320 |
tcgcagagctagcttgcaacaaaagtaa |
38522293 |
T |
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