View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298-Insertion-1 (Length: 1095)
Name: NF5298-Insertion-1
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 410 - 866
Target Start/End: Original strand, 32970250 - 32970708
Alignment:
| Q |
410 |
aagaagcaaaaagaaatatagattaaaaaa-tagcggcaattgtccaagcacggtgtgtaacccatacaaggtatcagattagaccaccaagaattaaaa |
508 |
Q |
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| T |
32970250 |
aagaagcaaaaagaaatatagattaaaaaaatagcgacaattgtccaagcactctgtgtaacc-atacaaggtattagattagaccaccaagaattaaaa |
32970348 |
T |
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| Q |
509 |
tcccaaaactaagctgattttttagccttcaaccacaaatgagattgaagcttgatcctatctgactcaaacccaaatattacttggagagacaatgatg |
608 |
Q |
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| T |
32970349 |
ttccaaaactaagctgattttttagccttca----caaatgagattgaagcttgatcctatctgactcaaacccaaatattacttggagagacaatgatg |
32970444 |
T |
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| Q |
609 |
aata---ctattgaacatcaattgaaaggacaaaagaaatatcgaccaatgtagagcacaactctaaatacttctaaacaaaaaagtcaca-----agaa |
700 |
Q |
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| T |
32970445 |
aatgttcctattgaacatcaattgaaagaacaaaagaaatatcgatcaatgtagagcacaactctaaatacttctaaa--aaaaagtcacattccaagaa |
32970542 |
T |
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| Q |
701 |
caaattattaatatatttttccttcccatacccactagagaacatcatagatcctcaatgaaaaagttagccgcatgtttgcatttatttttgagagagt |
800 |
Q |
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| T |
32970543 |
caaattattaatatatctttccttcccatacccactagagaacattatagatcctcaatgagaaagttagccgcatgtttgcatttatttttgagagagt |
32970642 |
T |
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| Q |
801 |
cagccatttttctaaaatattactaaaatttattttaacatatcctagatttctcattagaattga |
866 |
Q |
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| T |
32970643 |
caaccatttttctaaaaaattactaaaatttattttaacataccctagatttctcattagaattga |
32970708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 32969884 - 32970050
Alignment:
| Q |
50 |
cattcaacataatatgtcaggaacatctaacaagagaatgaaaaaatgtcctttgagcctaacttagttggtagaaaaattgtattatatatgtaagagt |
149 |
Q |
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| T |
32969884 |
cattcaacataatatgtcaggaacatctaacaagagaatgaaaaaacgtcctttgagtctaacttagttggtagaaaaattgtattatctatgtaagagt |
32969983 |
T |
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| Q |
150 |
tggatttaaaccacaaatttctcacttattatcttaaatggtgaaaatcgagccgttagactatttt |
216 |
Q |
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| T |
32969984 |
tggatttaaaccacaaatttctcacttattatcttaaatggtgaaaatctagccgctaaactatttt |
32970050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 32970116 - 32970165
Alignment:
| Q |
282 |
gtaaaattcaagaactattttaacccgttcgaactgatttccattcactc |
331 |
Q |
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| T |
32970116 |
gtaaaatttaaaaactattttaactcgttcgaactgatttccattcactc |
32970165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 695 - 762
Target Start/End: Complemental strand, 9723516 - 9723449
Alignment:
| Q |
695 |
caagaacaaattattaatatatttttccttcccatacccactagagaacatcatagatcctcaatgaa |
762 |
Q |
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| T |
9723516 |
caagaacaaatgattaatagatttttctttcccacaaccaccagagcacatcaaagatcctgaatgaa |
9723449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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