View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298-Insertion-11 (Length: 138)
Name: NF5298-Insertion-11
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 4913681 - 4913812
Alignment:
| Q |
7 |
agaacttttaattgaaaaatagggtgccatgatggactttcttcagtttccacatacaagttatttgtttttggtgacagaaggaaaacttcaagtttag |
106 |
Q |
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| T |
4913681 |
agaacttttaattgaaaagtagggtgccatgatggactttcttcagtttccacatacaagttatttgtttttggtgacagaaggaaaacttcaagtttag |
4913780 |
T |
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| Q |
107 |
aatgattattcaaagaactaaatgagaaaatt |
138 |
Q |
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| T |
4913781 |
aatgattattcaaagaactaaatgagaaaatt |
4913812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 32746689 - 32746823
Alignment:
| Q |
7 |
agaacttttaattgaaaaatagggtgccatgatggactttcttcagtttccacatacaagttatttgtttt---tggtgacagaaggaaaacttcaagtt |
103 |
Q |
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| T |
32746689 |
agaactcttaattgaaatgtagggtgccatgatggattttcttcagtttccacatgcaatttattgtttttcattcgtgacagaaggaaaacttcaagtt |
32746788 |
T |
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| Q |
104 |
tagaatgattattcaaagaactaaatgagaaaatt |
138 |
Q |
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| T |
32746789 |
tagaatgattagtcaaagaactgaatgagaaaatt |
32746823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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