View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5298-Insertion-12 (Length: 215)

Name: NF5298-Insertion-12
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5298-Insertion-12
NF5298-Insertion-12
[»] chr5 (16 HSPs)
chr5 (8-215)||(37704252-37704459)
chr5 (95-215)||(37595914-37596037)
chr5 (87-215)||(37391389-37391517)
chr5 (95-215)||(37534684-37534804)
chr5 (95-215)||(37641465-37641585)
chr5 (87-215)||(37698377-37698505)
chr5 (93-215)||(37441528-37441650)
chr5 (8-88)||(37437445-37437525)
chr5 (95-215)||(37713208-37713328)
chr5 (118-213)||(37380802-37380897)
chr5 (87-215)||(37411754-37411882)
chr5 (8-78)||(37698571-37698641)
chr5 (87-215)||(37437285-37437413)
chr5 (130-215)||(37825497-37825582)
chr5 (125-215)||(37399289-37399379)
chr5 (87-215)||(37430341-37430469)
[»] chr3 (1 HSPs)
chr3 (95-215)||(14554643-14554760)
[»] chr4 (3 HSPs)
chr4 (95-215)||(24216193-24216313)
chr4 (87-213)||(16841327-16841453)
chr4 (22-88)||(16841203-16841272)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 37704459 - 37704252
Alignment:
Q  8 tttggtccttgccccttagtttcaggatatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 37704360  T
Q  108 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704359 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 37704260  T
Q  208 gttacaat 215  Q
    ||||||||    
T  37704259 gttacaat 37704252  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 37596037 - 37595914
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattg---ctgcttactcattttacttcctacactttctcattgtgcagccaac 191  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| |||   |||||||||||||||||||||||||||||||||||||||| | |||    
T  37596037 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaac 37595938  T
Q  192 atgatagctccgccttgttacaat 215  Q
    |||| | ||| |||||||||||||    
T  37595937 atgacaactctgccttgttacaat 37595914  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 37391389 - 37391517
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||||||||     
T  37391389 aaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaa 37391488  T
Q  187 ccaacatgatagctccgccttgttacaat 215  Q
    ||  ||||||||||| |||||| ||||||    
T  37391489 ccttcatgatagctctgccttgctacaat 37391517  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 37534804 - 37534684
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||    
T  37534804 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatg 37534705  T
Q  195 atagctccgccttgttacaat 215  Q
    | | ||| |||||||||||||    
T  37534704 acaactctgccttgttacaat 37534684  T

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Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 37641585 - 37641465
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| || ||||| ||| || ||||||||||||||||||||||||||||| |||||| ||||||||    
T  37641585 tccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatg 37641486  T
Q  195 atagctccgccttgttacaat 215  Q
    | | ||| |||||||||||||    
T  37641485 acacctctgccttgttacaat 37641465  T

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Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 37698505 - 37698377
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| ||| |||||||||||||||||||||||||  ||||||| ||||     
T  37698505 aaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaa 37698406  T
Q  187 ccaacatgatagctccgccttgttacaat 215  Q
    ||| ||||| || || |||||||||||||    
T  37698405 ccatcatgacagttctgccttgttacaat 37698377  T

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Target: chr5; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 37441650 - 37441528
Alignment:
Q  93 ggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaaca 192  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||| | | ||||    
T  37441650 ggtccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaaca 37441551  T
Q  193 tgatagctccgccttgttacaat 215  Q
    ||| | ||| |||||||||||||    
T  37441550 tgacacctctgccttgttacaat 37441528  T

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Target: chr5; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
Q  8 tttggtccttgccccttagtttcaggatatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa 37437445  T

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Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 37713328 - 37713208
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||||||| ||||||||||| |||||| | ||||||    
T  37713328 tccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatg 37713229  T
Q  195 atagctccgccttgttacaat 215  Q
    | | ||| |||||||||||||    
T  37713228 acaactctgccttgttacaat 37713208  T

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Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 37380802 - 37380897
Alignment:
Q  118 ttttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttaca 213  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||  || |||||||||||    
T  37380802 ttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttaca 37380897  T

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Target: chr5; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 37411754 - 37411882
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||| |||| |||||||| | |||||||| |||||||||||||||||  ||||| |||||||||||||||||||||| |||||||| ||||     
T  37411754 aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattatgcaa 37411853  T
Q  187 ccaacatgatagctccgccttgttacaat 215  Q
    | | ||||| ||||  |||||||||||||    
T  37411854 ctatcatgacagctttgccttgttacaat 37411882  T

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Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
Q  8 tttggtccttgccccttagtttcaggatatgtttcctatataaatagaggctaatcaattggtatatccta 78  Q
    |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 37698571  T

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Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 37437413 - 37437285
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||||| ||||||| |||| |  |||||||||||| ||| ||| |||||||||| |||||| || ||||||||||||| ||||     
T  37437413 aaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaa 37437314  T
Q  187 ccaacatgatagctccgccttgttacaat 215  Q
    ||| ||||| | ||| ||||| |||||||    
T  37437313 ccatcatgacacctctgccttattacaat 37437285  T

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Target: chr5; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 37825582 - 37825497
Alignment:
Q  130 cttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaat 215  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||||||||    
T  37825582 cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaat 37825497  T

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Target: chr5; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 37399289 - 37399379
Alignment:
Q  125 tttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaat 215  Q
    ||||||||||||||||| ||| || |||||||||||||||| |||||||||||| | |||| ||| ||||| | ||| |||||||||||||    
T  37399289 tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaat 37399379  T

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Target: chr5; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 37430469 - 37430341
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||| | ||||||| |||||| || | |||||||||||||||||  ||||||| |||| |||||||||||| || || ||| ||||||     
T  37430469 aaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaa 37430370  T
Q  187 ccaacatgatagctccgccttgttacaat 215  Q
     || ||||| || || |||||||||||||    
T  37430369 gcatcatgacagttctgccttgttacaat 37430341  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 14554760 - 14554643
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||||||||||||||||| |||||||| |||||   |||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14554760 tccttttttattctattgccttattttacctttcactttttctt---attgttgcttactcattttacttcctatactttctcattgtgcaaccaacatg 14554664  T
Q  195 atagctccgccttgttacaat 215  Q
    | | ||| |||||||||||||    
T  14554663 acacctctgccttgttacaat 14554643  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 24216193 - 24216313
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||| ||||| |||| || |||||||||||| |||| ||| ||||||||||||||||||| ||||||| |||||| |||| ||| ||||    
T  24216193 tccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatg 24216292  T
Q  195 atagctccgccttgttacaat 215  Q
    | || || || ||||||||||    
T  24216293 acagttctgcattgttacaat 24216313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 16841327 - 16841453
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||| | ||||||| |||| |  |||||||||||||  |  ||||||||||||| ||||||||  ||||||| ||||| ||||     
T  16841327 aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa 16841426  T
Q  187 ccaacatgatagctccgccttgttaca 213  Q
    ||||||||| ||||| || ||||||||    
T  16841427 ccaacatgacagctctgctttgttaca 16841453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
Q  22 cttagtttcaggatatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||| |||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 16841272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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