View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5298-Insertion-2 (Length: 1000)

Name: NF5298-Insertion-2
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5298-Insertion-2
NF5298-Insertion-2
[»] chr4 (1 HSPs)
chr4 (8-802)||(42691160-42691956)


Alignment Details
Target: chr4 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 8 - 802
Target Start/End: Original strand, 42691160 - 42691956
Alignment:
Q  8 cgcaccaccttcacctccccaaaactcaaactctccaaaaccaaaccccgccgcaccggcggcggcgcactcggctccacaatgaactccccagccgccg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42691160 cgcaccaccttcacctccccaaaactcaaactctccaaaaccaaaccccgccgcaccggcggcggcgcactcggctccacaatgaactccccagccgccg 42691259  T
Q  108 ccagctacgccaccgcattagccgatttagccaaaaccaacaacaccctcgatgccaccactgcagacatcgacaaaatcgaagaactcttcaccgaccc 207  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42691260 ccagctacgccagcgcattagccgatttagccaaatccaacaacaccctcgacgccaccactgcagacatcgacaaaatcgaagaactcttcaccgaccc 42691359  T
Q  208 caaggtgttcgactatttctccagcccaactgtcgaagagtccaccaaacgcagactcattgctgaattcgctacttcctctagcttccaaccacacaca 307  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  42691360 caaggtgttcgactatttctccagcccaactgtcgaagactccaccaaacgcaatctcattgctgaattcgctacttcctctagcttccaaccacacaca 42691459  T
Q  308 caaaacttcctcaacctcctcatcgaagccaacagaatcgacatcatcctcgacatcgtcaaggaattcgaacttcattacaatactttaactgacacag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42691460 caaaacttcctcaacctcctcatcgaagccaacagaatcgacatcatcctcgaaatcgtcaaggaattcgaacttcattacaatactttaactgacacag 42691559  T
Q  408 agcttgttgtggtgacttcagtggtgaaattggagtctcagcatttggcgcagattgcgaaacaggtgcagaaacttactggggcgaagaatgtgaggat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42691560 agcttgttgtggtgacttcagtggtgaaattggagtctcagcatttggcgcagattgcgaaacaggtgcagaaacttactggggcgaagaatgtgaggat 42691659  T
Q  508 taaaaccaatcttgacccgagtttagtggcgggttttactgtcaggtatggtaattctgggtctaagtttattgatatgagtgttaagaagaaacttgag 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42691660 taaaaccaatcttgacccgagtttagtggcgggttttactgtcaggtatggtaattctgggtctaagtttattgatatgagtgttaagaagaaacttgag 42691759  T
Q  608 gaaattgcttctcaacttgatttgggtgatatcaaacttgctgtgtgaggattcttcaggctttgtttcaatttggtttactcaaattgt--aannnnnn 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |           
T  42691760 gaaattgcttctcaacttgatttgggtgatatcaaacttgctgtgtgagaattcttcaggctttgtttcaatttggtttactcaaattgttaattttttt 42691859  T
Q  706 ngggttataagtatattcatgtatgtatgaatgaatcctcaactgtgcacaatcttcttacaataatatattggctcccctgctttttaaattttgg 802  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42691860 tgggttataagtatattcatgtatgtatgaatgaatcctcaactgtgcacaatcttcttacaataatatattggctcccctgctttttaaattttgg 42691956  T

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