View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298-Insertion-3 (Length: 985)
Name: NF5298-Insertion-3
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 514
Target Start/End: Original strand, 40469580 - 40470088
Alignment:
| Q |
10 |
tccatcaactgatttgtgctagaaagatcgatcttaggagaggttaatgtaattttctctaatgatcaatgataatagcataaaagttattgaaggacaa |
109 |
Q |
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| T |
40469580 |
tccatcaactgatttgtgctcgaaagatcgatcttaggagaggttaatgtaattttctctaatgatcaatgataatagcataaaagttattgaaggacaa |
40469679 |
T |
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| Q |
110 |
tagtggcagtgttatcagaatagtatacgaagttacaaaccaacacccaattccaagacagacagacagactattgtcatcaaatgttgcaacagaaagt |
209 |
Q |
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| T |
40469680 |
tagtggcagtgttatcagaatagtatacgaagttacaaaccaacaccaaattccaagac----agacagactgctgtcatcaaatgttgcaacagaaagt |
40469775 |
T |
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| Q |
210 |
aaataacctagtctctgtagttactacattccaaattgtcaccatctataagaggatccaaagcatttagtcataataactatactgttattgttaacta |
309 |
Q |
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| T |
40469776 |
aaataacccagtctctgtagttactacattccaaattgtcaccatctataagaggatccaaagcatttagtcataataactatactgttattgttaacta |
40469875 |
T |
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| Q |
310 |
ataaatgaaagtgtagtgtcaatatggtttatctttacttaagagaagtcattgaatctttttcaga--------ttgttgtgttcttgagtggcatctc |
401 |
Q |
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| T |
40469876 |
ataaatgaaaatgtagtgtcaatatggtttatctttacttaagagaagtcgttgaatctttttcagatgtcatatttgttgtgttcttgagtggcatctc |
40469975 |
T |
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| Q |
402 |
atggttgtgttttccttcatatgtagtcacaaatgattttggatcatctattgatctctccacatgcttgcgaacgttacagttgatactagtacatcta |
501 |
Q |
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| T |
40469976 |
atggttgtgctttccttcatatgtagtcacaaatgattttggatcatctattgatctctccacatgcttgcgaacgttacagttgatactagtacatcta |
40470075 |
T |
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| Q |
502 |
tagtaacttctgc |
514 |
Q |
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| T |
40470076 |
tagtaacttctgc |
40470088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 589 - 916
Target Start/End: Original strand, 40470154 - 40470481
Alignment:
| Q |
589 |
cactagtcatttgaataaaaactctaacttattgatgtggagtccacataaaatgtgtcgtatcatactctctaacaattgaacttaatggatacatctt |
688 |
Q |
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| T |
40470154 |
cactagtcatttgaataaaaactctaacttattgatgtggcgtccacataaaatgtgtcgtatcatactctctaacaattgaacttaacggataaatctt |
40470253 |
T |
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| Q |
689 |
ttgattgtcatgttataatttcagggacaaaattgctaatttctaaaagttacagatggttacaatttcaggtacaaagtttcctacatactcgatattt |
788 |
Q |
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| T |
40470254 |
ttgattgtcatgttataatttcagggacaaaattgctaatttgtaaaagttacagatggttacaatttcaggtacaaaatttcctacatactcgatattt |
40470353 |
T |
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| Q |
789 |
tgggccgatgcatagcagaatttagaaccttgcgttataagtaatcttgaaacaactcgttttaaaagttactttgaagaagaaaaagtataaacctggg |
888 |
Q |
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| T |
40470354 |
tgggccgatgcatagcagaatttagaaccttgcgttataagtaatcttgaaacaactcattttaaaagttactttgaagaag-aaaagtataaacctggg |
40470452 |
T |
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| Q |
889 |
atatggattt-ccttcaccaccttctgcc |
916 |
Q |
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| T |
40470453 |
atatggatttcccttcaccaccttctgcc |
40470481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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