View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298-Insertion-4 (Length: 785)
Name: NF5298-Insertion-4
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 8 - 785
Target Start/End: Original strand, 5051548 - 5052333
Alignment:
| Q |
8 |
gaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctacttttctggttttc |
107 |
Q |
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| T |
5051548 |
gaaatttggtttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgctacttttctggttttc |
5051647 |
T |
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| Q |
108 |
ttctt---tcatttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagatta------agaagcgctttgcgatg |
198 |
Q |
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| T |
5051648 |
ttcttctttcatttgttggaccaaagtatattggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatg |
5051747 |
T |
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| Q |
199 |
gatttgcatctcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaa |
298 |
Q |
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| T |
5051748 |
gatttgcatctcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaa |
5051847 |
T |
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| Q |
299 |
tagattgtatgttcacgagctattacctaccaaattttaattggataatggattttgatacttagttgaacaattatgatagccctttgcccaactgtta |
398 |
Q |
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| T |
5051848 |
tagattgtatgttcacgagctattacctaccaaatttaaattggataattgattctgatacttagttgaacaattatgatagccctttgcccaactgtca |
5051947 |
T |
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| Q |
399 |
aattatgtattactgctgacttgattgatcccggccccaatcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaacc |
498 |
Q |
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| T |
5051948 |
aattatgtattgttgctgacttgattgatcccggccccgatcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaacc |
5052047 |
T |
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| Q |
499 |
ccctcattccctttacttactgccatgttcataggccactcttaaagatagtgaggttcaaagtattgacattgccaagaaggcgtttacaggaatgtga |
598 |
Q |
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| T |
5052048 |
ccctcattccctttacttactgccatgttcataggccactctcaaagacagtgaggttcaatgtattgacattgccaagaaggcgtttacaggaatgtga |
5052147 |
T |
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| Q |
599 |
gtttggattggaatattcagtgaacattgaagacaatagtaccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcagatttggatat |
698 |
Q |
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| T |
5052148 |
gtttggattggaa-attcagtgaacatttaagacaatagtaccttggtttcagatgttttatggtcatgacgtaggcatgatctcatcaaatttggatat |
5052246 |
T |
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| Q |
699 |
gttttaatgttttgcattgacttaactagtcaatgttnnnnnnnttgattataatatacaatatggatttcaaatatagtagttaat |
785 |
Q |
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| T |
5052247 |
gttttaatgctttgcattgacttaactagtcaatgttaaaaaatttgattataatatacaatatggctttcaaatatagtagttaat |
5052333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 637 - 716
Target Start/End: Original strand, 5048194 - 5048273
Alignment:
| Q |
637 |
gtaccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcagatttggatatgttttaatgttttgcatt |
716 |
Q |
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| T |
5048194 |
gtaccttagtttcaaatgtttgactgttctgacttggtcatgatctcatcaaatttggatatgttttaatgctttgcatt |
5048273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 51273819 - 51273452
Alignment:
| Q |
8 |
gaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctactttt-ctggtttt |
106 |
Q |
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| T |
51273819 |
gaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggtttt |
51273720 |
T |
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| Q |
107 |
ctt---ctttcatttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagattaa------gaagcgctttgcgat |
197 |
Q |
| |
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||| ||||||||||||||| |||||||| ||||||||| || |||||||||| |||||||||||||||||||||| ||| ||||||| ||| |
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| T |
51273719 |
cttgttctttcatttgttggagcaaagtat---ggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagat |
51273623 |
T |
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| Q |
198 |
ggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgct |
296 |
Q |
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| T |
51273622 |
ggatttgcaactcactgctgtcttgtacgaaacacgactccatatctctatcaataaatcatctgataaattctccatgttgattttagtatatattgct |
51273523 |
T |
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| Q |
297 |
aatagattg-tatgttcacgagctattacctaccaaattttaattggataatggattttgatacttagttg |
366 |
Q |
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| T |
51273522 |
agaatattgttatgttcaagagctataagctaccaaattttaattggataatcgattctgatacttggttg |
51273452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 14907717 - 14907599
Alignment:
| Q |
180 |
taagaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttg |
278 |
Q |
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| T |
14907717 |
taagatgcgctttgagatggatttgtaactcactgatgttttgtatgaaacacgaatccatgtctctatcaataaatcatctgataaattctccatgttg |
14907618 |
T |
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| Q |
279 |
attgtagtatatattgcta |
297 |
Q |
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| T |
14907617 |
atttaagtatatattgcta |
14907599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 14907847 - 14907802
Alignment:
| Q |
9 |
aaatttggtttgcaggagtagaaagatggagattggatgacaacga |
54 |
Q |
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| T |
14907847 |
aaatttggttttcaggagtagaaagattgagattgggtgagaacga |
14907802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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