View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5298-Insertion-5 (Length: 735)

Name: NF5298-Insertion-5
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5298-Insertion-5
NF5298-Insertion-5
[»] chr2 (2 HSPs)
chr2 (8-540)||(3915908-3916435)
chr2 (539-735)||(3916469-3916665)
[»] chr8 (1 HSPs)
chr8 (555-713)||(23639612-23639770)
[»] chr3 (11 HSPs)
chr3 (18-136)||(16035451-16035569)
chr3 (18-86)||(16061608-16061676)
chr3 (18-86)||(16046093-16046161)
chr3 (18-90)||(52651341-52651413)
chr3 (18-136)||(16052207-16052325)
chr3 (18-90)||(31682480-31682552)
chr3 (18-90)||(31895880-31895952)
chr3 (18-90)||(31900464-31900536)
chr3 (18-90)||(31916173-31916245)
chr3 (18-90)||(31949821-31949893)
chr3 (18-86)||(16057462-16057530)


Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Original strand, 3915908 - 3916435
Alignment:
Q  8 cattttttattccaagacttgatc---ccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgaccgaagagttcggga 104  Q
    ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915908 cattttttattccaagacttgatcggcccaagacaggaaagtactggcgcaaggtggctcatatccaacatatcgaaattgatgaccgaagagttcggga 3916007  T
Q  105 atatagttatagatatggatgaccaaaaagcttgatgtttggatttcgtgactctaaatgtattttctctacatagctttgtaggatagataatatttgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3916008 atatagttatagatatggatgaccaaaaagcttgatgtttggatttcgtgactctaaatttattttctctacatagctttgtaggatagataatatttgc 3916107  T
Q  205 ttcacnnnnnnnacctttaactttactatttttgttcatttccaaagcatagaagaaaacccttatcatttactatatatatgacaagcatggactatgt 304  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  3916108 ttcactttttttacctttaactttactatttttgttcatttccaaagcatagaagaaaacccttatcatttac----tatatgacaagcatggactatgt 3916203  T
Q  305 atctaacannnnnnnnnnnnnnnnngcatgtcatgtatataagttatgtgttcattatgttagaaaagggccacattattgaaagccataaaattaacat 404  Q
    ||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3916204 atctaaca-----ttttttttttttgcatgtcatgtatataagttatgtgttcattatgttagaaaagggccacattattgaaagccataaaattaacat 3916298  T
Q  405 actagagaaattgtaatgaggaggcgcctttgttaat-aaacaatagcactggtgtgctgcaaaggcaaaagtatatattagaaaataaacagtacatgt 503  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3916299 actagagaaattgtaatgaggaggcgcctttgttaataaaacaatagcactggtgtgctgcaaaggcaaaagtatatattagaaaataatcagtacatgt 3916398  T
Q  504 gtaatttggttctaacctgttgttagttagcaactct 540  Q
    |||||||||||||||||||||||||||||||||||||    
T  3916399 gtaatttggttctaacctgttgttagttagcaactct 3916435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 539 - 735
Target Start/End: Original strand, 3916469 - 3916665
Alignment:
Q  539 cttggttctgtatctggttttttggtcttcaatttggtaaagagaaagaaagaatgannnnnnngtgactggaaattgatcttgaaatgctgtatttctc 638  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||| ||||||||||    
T  3916469 cttggttctgtatctggttttttggtcttcaatttggtaaagagaaagaaagaatgatttttttgtgactggaaattgattttgaaatgttgtatttctc 3916568  T
Q  639 aattcccacgaatatttgaaaggtaaagcttgtgcattttcttcatttcatttgcatctgtttagattcagtttagctcccattagtttatcttttg 735  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3916569 aattcccgcgaatatttgaaaggtaaagcttgtgcattttcttcatttcatttgaatctgtttagattcagtttagctcccattagtttatcttttg 3916665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 555 - 713
Target Start/End: Original strand, 23639612 - 23639770
Alignment:
Q  555 gttttttggtcttcaatttggtaaagagaaagaaagaatgannnnnnngtgactggaaattgatcttgaaatgctgtatttctcaattcccacgaatatt 654  Q
    ||||| ||||||||| ||||||| |||||||||||  ||||       ||||||| |||| |||||| ||| | |  |||||||||||||  ||| ||||    
T  23639612 gttttgtggtcttcattttggtagagagaaagaaatgatgatcattgtgtgactgtaaatcgatcttaaaaagttagatttctcaattcctgcgagtatt 23639711  T
Q  655 tgaaaggtaaagcttgtgcattttcttcatttcatttgcatctgtttagattcagttta 713  Q
     ||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  23639712 ggaaaggttaagtttgtgcattttcttcatttcatttgcatctgtttagtttctgttta 23639770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 16035569 - 16035451
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgaccgaagagttcgggaatatagttataga 117  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||| |||   |||||| |||||  |  |||||||    
T  16035569 tccaagacttgaacccaagacaggaaagtactggcacaaggtggctcatatctaacatatagaaattgaagacaagagagtttgggaaccttcttataga 16035470  T
Q  118 tatggatgaccaaaaagct 136  Q
    |||  |||| |||||||||    
T  16035469 tattaatgagcaaaaagct 16035451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 16061676 - 16061608
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattga 86  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||    
T  16061676 tccaagacttgaacccaagacaggaaagtactggcacaaggtggctcatattcaacatatagaaattga 16061608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 16046161 - 16046093
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattga 86  Q
    |||||||||||| |||||||||||||| ||||||| |||| ||||||||||| ||||||| ||||||||    
T  16046161 tccaagacttgaacccaagacaggaaagtactggcacaagatggctcatatctaacatatagaaattga 16046093  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 52651413 - 52651341
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 90  Q
    |||||||||| | ||||||| |||||| ||||||||||||||||||||||| |  ||||| ||||||||||||    
T  52651413 tccaagacttaaacccaagaaaggaaagtactggcgcaaggtggctcatattcctcatatagaaattgatgac 52651341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 16052325 - 16052207
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgaccgaagagttcgggaatatagttataga 117  Q
    |||||||||||| || |||| | |||| ||||||| |||||||| ||||||||||||||| |||||||| |||   |||||| |||||  |  |||||||    
T  16052325 tccaagacttgaacctaagaaacgaaagtactggcacaaggtggatcatatccaacatatagaaattgaagacaagagagtttgggaaccttcttataga 16052226  T
Q  118 tatggatgaccaaaaagct 136  Q
    |||  |||| |||||||||    
T  16052225 tattaatgagcaaaaagct 16052207  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 31682552 - 31682480
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 90  Q
    |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31682552 tccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31682480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31895880 - 31895952
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 90  Q
    |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31895880 tccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31895952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31900464 - 31900536
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 90  Q
    |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31900464 tccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31900536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31916173 - 31916245
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 90  Q
    |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31916173 tccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31916245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31949821 - 31949893
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 90  Q
    |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31949821 tccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31949893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 16057530 - 16057462
Alignment:
Q  18 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattga 86  Q
    |||||||||||| ||||||| |||||  || |||| |||||||||| |||| |||||||| ||||||||    
T  16057530 tccaagacttgaacccaagataggaatgtattggctcaaggtggcttatattcaacatatagaaattga 16057462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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