View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298-Insertion-7 (Length: 427)
Name: NF5298-Insertion-7
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298-Insertion-7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 39902698 - 39902846
Alignment:
| Q |
279 |
ttcataaactatctcaaagaaactataaaaataagctgagatgagcttatgaacatctaataagctatcttcataagttaaaataagccaatcttaaatc |
378 |
Q |
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| T |
39902698 |
ttcataaactatctcaaagaaactataaaaataagctgagatgagcttatgaacatgtaataagctatcttcataagttaaaataagccaatcttaaatc |
39902797 |
T |
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| Q |
379 |
agttgattagattaacggaaacagcaaaggagagagtaagtacctttgt |
427 |
Q |
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| T |
39902798 |
agttgattagattaacggaaacagcaaaggagagagtaagtacctttgt |
39902846 |
T |
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Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 39902534 - 39902642
Alignment:
| Q |
114 |
cacttgttgcagtttgaaaacaaacccactttgtttactactttcaaagattaacaaaggaattttctctattgcactacaaatctttgaaattgataac |
213 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902534 |
cacttgttgccgtttgaaaacaaacccactttgtttactactttcaaagattaacaaaggaattttctctattgcactacaaatctttgaaattgataac |
39902633 |
T |
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| Q |
214 |
aaagtagca |
222 |
Q |
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| T |
39902634 |
aaagtagca |
39902642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 39902212 - 39902319
Alignment:
| Q |
11 |
atattgtctcaaggaacattgacaatagttatatgaaaatttgaaaatggactatctagttcaaataggttgacatagttataaaaagaatttgattttt |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902212 |
atattgtctcaaggaacattgacaataattatatgaaaatttgaaaatggactatctagttcaaataggttgacatagttataaaaagaatttgattttt |
39902311 |
T |
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| Q |
111 |
aagcactt |
118 |
Q |
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|||||||| |
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| T |
39902312 |
aagcactt |
39902319 |
T |
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