View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298-Insertion-8 (Length: 290)
Name: NF5298-Insertion-8
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298-Insertion-8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 35364814 - 35365062
Alignment:
| Q |
41 |
aattagttacaattatataaaagaaataaatcagaaagtgatgaaatagtttttctaaataattttcatttatgcnnnnnnnaagcttaagtagtacctc |
140 |
Q |
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| T |
35364814 |
aattagttacaattatataaaagaaataaatcagaaagtgatgaaatagtttttctaaataattttcatttatgctttttttaagcttaagtagtacctc |
35364913 |
T |
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| Q |
141 |
agtaaattgaaatttaatttcttactgcaaaattaatagaaaagattgatacattgaggtttagtgcacataccaaaagcttgagggttgttaacaaaat |
240 |
Q |
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| T |
35364914 |
agtaaattgaaatttaatttcttactgcaaaattaatagaaa-gattgatacatagaggtttagtgcacataccaaaagcttgagggttgttaacaaaat |
35365012 |
T |
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| Q |
241 |
ccatgaacagtttgtgtgcagtaatagcaatgaagacatcagcaccaatc |
290 |
Q |
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| T |
35365013 |
ccatgaacagtttatgtgcagtaatagcaatgaagacatcagcaccaatc |
35365062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 35357942 - 35358028
Alignment:
| Q |
204 |
gtgcacataccaaaagcttgagggttgttaacaaaatccatgaacagtttgtgtgcagtaatagcaatgaagacatcagcaccaatc |
290 |
Q |
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| T |
35357942 |
gtgcacataccaaaagctttagggttggtaataaaatccatgtgcattttatgtgcattaacagcaatgaagacatcatcaccaatc |
35358028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 35376509 - 35376606
Alignment:
| Q |
193 |
attgaggtttagtgcacataccaaaagcttgagggttgttaacaaaatccatgaacagtttgtgtgcagtaatagcaatgaagacatcagcaccaatc |
290 |
Q |
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| T |
35376509 |
attgaagtttagtgcacataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatc |
35376606 |
T |
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